Index

A

a1 (StackingFaultStatic property) a2 (StackingFaultStatic property) a_mult (Phonon property) a_values (EvsRScan property) allkeys (Calculation property) alpha (DislocationSDVPN property) anneal_info() (in module iprPy.calculation.dislocation_monopole.dislocation_monopole) (in module iprPy.calculation.dislocation_periodic_array.dislocation_periodic_array)

annealsteps (DislocationMonopole property) (DislocationPeriodicArray property) annealtemperature (DislocationMonopole property) (DislocationPeriodicArray property) aslist() (in module iprPy.tools) atomman_version (Calculation property)

B

B0 (Phonon property) B0prime (Phonon property) b_mult (Phonon property) bandstructure (Phonon property) beta (DislocationSDVPN property) bond_angle_scan() (in module iprPy.calculation.bond_angle_scan.bond_angle_scan) BondAngleScan (class in iprPy.calculation.bond_angle_scan.BondAngleScan) boolean() (in module iprPy.input) boundaryscale (DislocationMonopole property) (DislocationPeriodicArray property) boundaryshape (DislocationMonopole property) boundarywidth (DislocationMonopole property) (DislocationPeriodicArray property) branch (Calculation property) build_model() (BondAngleScan method) (Calculation method) (CrystalSpaceGroup method) (DiatomScan method) (DislocationMonopole method) (DislocationPeriodicArray method) (DislocationSDVPN method) (ElasticConstantsStatic method) (EnergyCheck method) (EvsRScan method) (FreeEnergy method) (FreeEnergyLiquid method) (IsolatedAtom method) (Phonon method) (PointDefectDiffusion method) (PointDefectStatic method) (Record method) (RelaxBox method) (RelaxDynamic method) (RelaxLiquid method) (RelaxStatic method) (StackingFaultMap2D method) (StackingFaultPath method) (StackingFaultStatic method) (SurfaceEnergyStatic method)

buildcombos() (in module iprPy.input)

C

C (ElasticConstantsStatic property) c_mult (Phonon property) calc() (Calculation method) (in module iprPy.calculation.point_defect_static.point_defect_static) calc_inputs() (BondAngleScan method) (Calculation method) (CrystalSpaceGroup method) (DiatomScan method) (DislocationMonopole method) (DislocationPeriodicArray method) (DislocationSDVPN method) (ElasticConstantsStatic method) (EnergyCheck method) (EvsRScan method) (FreeEnergy method) (FreeEnergyLiquid method) (IsolatedAtom method) (Phonon method) (PointDefectDiffusion method) (PointDefectStatic method) (RelaxBox method) (RelaxDynamic method) (RelaxLiquid method) (RelaxStatic method) (StackingFaultMap2D method) (StackingFaultStatic method) (SurfaceEnergyStatic method) calc_style (Calculation property) calclist (RunManager property) Calculation (class in iprPy.calculation) cdcsquery() (Calculation method) (Record method) cdiffelastic (DislocationSDVPN property) cdiffstress (DislocationSDVPN property) cdiffsurface (DislocationSDVPN property) centrosummation (PointDefectStatic property) check_modules() (in module iprPy) check_ptd_config() (in module iprPy.calculation.point_defect_static.point_defect_static) cij_run0() (in module iprPy.calculation.relax_box.relax_box) clean() (Calculation method) clear_tar() (Record method) cluster (BondAngleScan property) command_line() (in module iprPy) commands (BondAngleScan property) (DiatomScan property) (DislocationMonopole property) (DislocationPeriodicArray property) (ElasticConstantsStatic property) (EnergyCheck property) (EvsRScan property) (FreeEnergy property) (FreeEnergyLiquid property) (IsolatedAtom property) (Phonon property) (PointDefectDiffusion property) (PointDefectStatic property) (RelaxBox property) (RelaxDynamic property) (RelaxLiquid property) (RelaxStatic property) (StackingFaultMap2D property) (StackingFaultStatic property) (SurfaceEnergyStatic property)

commontemplatekeys (Calculation property) compare_fterms (BondAngleScan property) (Calculation property) (CrystalSpaceGroup property) (DiatomScan property) (DislocationMonopole property) (DislocationPeriodicArray property) (DislocationSDVPN property) (ElasticConstantsStatic property) (EvsRScan property) (FreeEnergy property) (FreeEnergyLiquid property) (IsolatedAtom property) (Phonon property) (PointDefectDiffusion property) (PointDefectStatic property) (RelaxBox property) (RelaxDynamic property) (RelaxLiquid property) (RelaxStatic property) (StackingFaultMap2D property) (StackingFaultStatic property) (SurfaceEnergyStatic property) compare_terms (BondAngleScan property) (Calculation property) (CrystalSpaceGroup property) (DiatomScan property) (DislocationMonopole property) (DislocationPeriodicArray property) (DislocationSDVPN property) (ElasticConstantsStatic property) (EnergyCheck property) (EvsRScan property) (FreeEnergy property) (FreeEnergyLiquid property) (IsolatedAtom property) (Phonon property) (PointDefectDiffusion property) (PointDefectStatic property) (RelaxBox property) (RelaxDynamic property) (RelaxLiquid property) (RelaxStatic property) (StackingFaultMap2D property) (StackingFaultStatic property) (SurfaceEnergyStatic property) coolsteps (RelaxLiquid property) coord (StackingFaultPath property) crystal_space_group() (in module iprPy.calculation.crystal_space_group.crystal_space_group) CrystalSpaceGroup (class in iprPy.calculation.crystal_space_group.CrystalSpaceGroup) cutofflongrange (DislocationSDVPN property) cycletolerance (RelaxStatic property)

D

d (PointDefectDiffusion property) database (Calculation property) (Record property) (RunManager property) db_vect_shift (PointDefectStatic property) defect (DislocationMonopole property) (DislocationPeriodicArray property) (DislocationSDVPN property) (PointDefectDiffusion property) (PointDefectStatic property) (StackingFaultMap2D property) (StackingFaultStatic property) (SurfaceEnergyStatic property) diatom_scan() (in module iprPy.calculation.diatom_scan.diatom_scan) DiatomScan (class in iprPy.calculation.diatom_scan.DiatomScan) dict_insert() (in module iprPy.tools) dicttoterm() (in module iprPy.input) dipole_tensor (PointDefectStatic property) direction (StackingFaultPath property) disl_relax() (in module iprPy.calculation.dislocation_monopole.dislocation_monopole) (in module iprPy.calculation.dislocation_periodic_array.dislocation_periodic_array) dislocation (DislocationMonopole property) (DislocationPeriodicArray property) dislocation_array() (in module iprPy.calculation.dislocation_periodic_array.dislocation_periodic_array) dislocation_monopole() (in module iprPy.calculation.dislocation_monopole.dislocation_monopole)

DislocationMonopole (class in iprPy.calculation.dislocation_monopole.DislocationMonopole) DislocationPeriodicArray (class in iprPy.calculation.dislocation_periodic_array.DislocationPeriodicArray) DislocationSDVPN (class in iprPy.calculation.dislocation_SDVPN.DislocationSDVPN) displacementdistance (Phonon property) displacementkick (RelaxStatic property) disregistries (DislocationSDVPN property) dos (Phonon property) dumpfile_base (DislocationMonopole property) (DislocationPeriodicArray property) (PointDefectStatic property) (StackingFaultStatic property) (SurfaceEnergyStatic property) dumpfile_defect (DislocationMonopole property) (DislocationPeriodicArray property) (PointDefectStatic property) (StackingFaultStatic property) (SurfaceEnergyStatic property) dumpsteps (PointDefectDiffusion property) (RelaxDynamic property) (RelaxLiquid property) duplicatecutoff (DislocationPeriodicArray property) dx (PointDefectDiffusion property) dy (PointDefectDiffusion property) dynamic_import() (in module iprPy.tools) dz (PointDefectDiffusion property)

E

E0 (Phonon property) E_isf (StackingFaultMap2D property) E_pot (RelaxLiquid property) E_pot_stderr (RelaxLiquid property) E_total (RelaxLiquid property) E_total_stderr (RelaxLiquid property) e_vs_r_scan() (in module iprPy.calculation.E_vs_r_scan.e_vs_r_scan) einstein_free_energy() (in module iprPy.calculation.free_energy.free_energy) einstein_spring_constants() (in module iprPy.calculation.free_energy.free_energy) elastic (DislocationMonopole property) (DislocationPeriodicArray property) (DislocationSDVPN property) elastic_constants_static() (in module iprPy.calculation.elastic_constants_static.elastic_constants_static) ElasticConstantsStatic (class in iprPy.calculation.elastic_constants_static.ElasticConstantsStatic) energies (DislocationSDVPN property)

energy_check() (in module iprPy.calculation.energy_check.energy_check) energy_values (DiatomScan property) (EvsRScan property) EnergyCheck (class in iprPy.calculation.energy_check.EnergyCheck) equilenergysamples (RelaxLiquid property) equilenergysteps (RelaxLiquid property) equilenergystyle (RelaxLiquid property) equilsteps (FreeEnergy property) (FreeEnergyLiquid property) (PointDefectDiffusion property) (RelaxDynamic property) equilvolumesamples (RelaxLiquid property) equilvolumesteps (RelaxLiquid property) error (Calculation property) (StackingFaultPath property) EvsRScan (class in iprPy.calculation.E_vs_r_scan.EvsRScan)

F

filenames (BondAngleScan property) (Calculation property) (CrystalSpaceGroup property) (DiatomScan property) (DislocationMonopole property) (DislocationPeriodicArray property) (DislocationSDVPN property) (ElasticConstantsStatic property) (EnergyCheck property) (EvsRScan property) (FreeEnergy property) (FreeEnergyLiquid property) (IsolatedAtom property) (Phonon property) (PointDefectDiffusion property) (PointDefectStatic property) (RelaxBox property) (RelaxDynamic property) (RelaxLiquid property) (RelaxStatic property) (StackingFaultMap2D property) (StackingFaultStatic property) (SurfaceEnergyStatic property)

files (Calculation property) filltemplate() (in module iprPy.tools) final_box (RelaxBox property) (RelaxDynamic property) (RelaxStatic property) final_dump (RelaxBox property) (RelaxDynamic property) (RelaxLiquid property) (RelaxStatic property) fix_lammps_versions() (in module iprPy) formation_energy (PointDefectStatic property) free_energy() (in module iprPy.calculation.free_energy.free_energy) free_energy_liquid() (in module iprPy.calculation.free_energy_liquid.free_energy_liquid) FreeEnergy (class in iprPy.calculation.free_energy.FreeEnergy) FreeEnergyLiquid (class in iprPy.calculation.free_energy_liquid.FreeEnergyLiquid) fullstress (DislocationSDVPN property)

G

gamma (DislocationSDVPN property) (StackingFaultMap2D property) get_file() (Record method)

gibbs (FreeEnergy property) (FreeEnergyLiquid property) gsf_displacement (StackingFaultStatic property) gsf_energy (StackingFaultStatic property)

H

has_reconfigured (PointDefectStatic property) helmholtz (FreeEnergy property) (FreeEnergyLiquid property)

helmholtz_reference (FreeEnergy property) (FreeEnergyLiquid property) hold_directory (RunManager property) html() (Record method)

I

iaslist() (in module iprPy.tools) ideal_gas_free_energy() (in module iprPy.calculation.free_energy_liquid.free_energy_liquid) idealcell (CrystalSpaceGroup property) initial_dump (RelaxBox property) (RelaxDynamic property) (RelaxStatic property) integrate_for_work() (in module iprPy.calculation.free_energy.free_energy) (in module iprPy.calculation.free_energy_liquid.free_energy_liquid) integrator (RelaxDynamic property) integrator_info() (in module iprPy.calculation.relax_dynamic.relax_dynamic) international (CrystalSpaceGroup property) iprPy module iprPy.calculation module iprPy.calculation.bond_angle_scan.bond_angle_scan module iprPy.calculation.bond_angle_scan.BondAngleScan module iprPy.calculation.crystal_space_group.crystal_space_group module iprPy.calculation.crystal_space_group.CrystalSpaceGroup module iprPy.calculation.diatom_scan.diatom_scan module iprPy.calculation.diatom_scan.DiatomScan module iprPy.calculation.dislocation_monopole.dislocation_monopole module iprPy.calculation.dislocation_monopole.DislocationMonopole module iprPy.calculation.dislocation_periodic_array.dislocation_periodic_array module iprPy.calculation.dislocation_periodic_array.DislocationPeriodicArray module iprPy.calculation.dislocation_SDVPN.dislocation_SDVPN module iprPy.calculation.dislocation_SDVPN.DislocationSDVPN module iprPy.calculation.E_vs_r_scan.e_vs_r_scan module iprPy.calculation.E_vs_r_scan.EvsRScan module iprPy.calculation.elastic_constants_static.elastic_constants_static module iprPy.calculation.elastic_constants_static.ElasticConstantsStatic module iprPy.calculation.energy_check.energy_check module iprPy.calculation.energy_check.EnergyCheck module iprPy.calculation.free_energy.free_energy module iprPy.calculation.free_energy.FreeEnergy module iprPy.calculation.free_energy_liquid.free_energy_liquid module iprPy.calculation.free_energy_liquid.FreeEnergyLiquid module iprPy.calculation.isolated_atom.isolated_atom module

iprPy.calculation.isolated_atom.IsolatedAtom module iprPy.calculation.phonon.calc_phonon module iprPy.calculation.phonon.Phonon module iprPy.calculation.point_defect_diffusion.point_defect_diffusion module iprPy.calculation.point_defect_diffusion.PointDefectDiffusion module iprPy.calculation.point_defect_static.point_defect_static module iprPy.calculation.point_defect_static.PointDefectStatic module iprPy.calculation.relax_box.relax_box module iprPy.calculation.relax_box.RelaxBox module iprPy.calculation.relax_dynamic.relax_dynamic module iprPy.calculation.relax_dynamic.RelaxDynamic module iprPy.calculation.relax_liquid.relax_liquid module iprPy.calculation.relax_liquid.RelaxLiquid module iprPy.calculation.relax_static.relax_static module iprPy.calculation.relax_static.RelaxStatic module iprPy.calculation.stacking_fault_map_2D.stacking_fault_map_2D module iprPy.calculation.stacking_fault_map_2D.StackingFaultMap2D module iprPy.calculation.stacking_fault_static.stacking_fault_static module iprPy.calculation.stacking_fault_static.StackingFaultStatic module iprPy.calculation.surface_energy_static.surface_energy_static module iprPy.calculation.surface_energy_static.SurfaceEnergyStatic module iprPy.database module iprPy.input module iprPy.record module iprPy.tools module iprPy_version (Calculation property) isolated_atom() (in module iprPy.calculation.isolated_atom.isolated_atom) isolated_atom_energy (IsolatedAtom property) IsolatedAtom (class in iprPy.calculation.isolated_atom.IsolatedAtom) isvalid() (Calculation method) (DislocationMonopole method) (DislocationPeriodicArray method) (DislocationSDVPN method) (PointDefectStatic method) (StackingFaultMap2D method) (StackingFaultStatic method) (SurfaceEnergyStatic method)

K

K_tensor (DislocationMonopole property) (DislocationPeriodicArray property)

key (Calculation property)

L

lammps_output (RelaxLiquid property) load_calculation() (in module iprPy) (in module iprPy.calculation) load_database() (in module iprPy) (in module iprPy.database) load_model() (BondAngleScan method) (Calculation method) (CrystalSpaceGroup method) (DiatomScan method) (DislocationMonopole method) (DislocationPeriodicArray method) (DislocationSDVPN method) (ElasticConstantsStatic method) (EnergyCheck method) (EvsRScan method) (FreeEnergy method) (FreeEnergyLiquid method) (IsolatedAtom method) (Phonon method) (PointDefectDiffusion method) (PointDefectStatic method) (Record method) (RelaxBox method) (RelaxDynamic method) (RelaxLiquid method) (RelaxStatic method) (StackingFaultMap2D method) (StackingFaultStatic method) (SurfaceEnergyStatic method) load_parameters() (BondAngleScan method) (Calculation method) (CrystalSpaceGroup method) (DiatomScan method) (DislocationMonopole method) (DislocationPeriodicArray method) (DislocationSDVPN method) (ElasticConstantsStatic method) (EnergyCheck method) (EvsRScan method) (FreeEnergy method) (FreeEnergyLiquid method) (IsolatedAtom method) (Phonon method) (PointDefectDiffusion method) (PointDefectStatic method) (RelaxBox method) (RelaxDynamic method) (RelaxLiquid method) (RelaxStatic method) (StackingFaultMap2D method) (StackingFaultStatic method) (SurfaceEnergyStatic method)

load_record() (in module iprPy) (in module iprPy.record) load_run_directory() (in module iprPy) load_system_base() (PointDefectStatic method) load_system_defect() (PointDefectStatic method) logfilename (RunManager property) lx_mean (RelaxDynamic property) lx_std (RelaxDynamic property) ly_mean (RelaxDynamic property) ly_std (RelaxDynamic property) lz_mean (RelaxDynamic property) lz_std (RelaxDynamic property)

M

maindoc (Calculation property) master_prepare() (in module iprPy.database) master_prepare_inputs() (BondAngleScan method) (Calculation method) (CrystalSpaceGroup method) (DiatomScan method) (DislocationMonopole method) (DislocationPeriodicArray method) (DislocationSDVPN method) (ElasticConstantsStatic method) (EvsRScan method) (FreeEnergy method) (FreeEnergyLiquid method) (IsolatedAtom method) (Phonon method) (PointDefectDiffusion method) (PointDefectStatic method) (RelaxBox method) (RelaxDynamic method) (RelaxLiquid method) (RelaxStatic method) (StackingFaultMap2D method) (StackingFaultStatic method) (SurfaceEnergyStatic method) maxcycles (RelaxStatic property) maximum_r (BondAngleScan property) (DiatomScan property) (EvsRScan property) maximum_theta (BondAngleScan property) measured_pressure (RelaxLiquid property) measured_pressure_stderr (RelaxLiquid property) measured_pressure_xx (PointDefectDiffusion property) (RelaxBox property) (RelaxDynamic property) (RelaxStatic property) measured_pressure_xx_std (PointDefectDiffusion property) (RelaxDynamic property) measured_pressure_xy (RelaxBox property) (RelaxDynamic property) (RelaxStatic property) measured_pressure_xy_std (RelaxDynamic property) measured_pressure_xz (RelaxBox property) (RelaxDynamic property) (RelaxStatic property) measured_pressure_xz_std (RelaxDynamic property) measured_pressure_yy (PointDefectDiffusion property) (RelaxBox property) (RelaxDynamic property) (RelaxStatic property) measured_pressure_yy_std (PointDefectDiffusion property) (RelaxDynamic property) measured_pressure_yz (RelaxBox property) (RelaxDynamic property) (RelaxStatic property) measured_pressure_yz_std (RelaxDynamic property) measured_pressure_zz (PointDefectDiffusion property) (RelaxBox property) (RelaxDynamic property) (RelaxStatic property) measured_pressure_zz_std (PointDefectDiffusion property) (RelaxDynamic property) measured_temperature (PointDefectDiffusion property) (RelaxDynamic property) (RelaxLiquid property) measured_temperature_std (PointDefectDiffusion property) (RelaxDynamic property) measured_temperature_stderr (RelaxLiquid property) meltsteps (RelaxLiquid property) metadata() (BondAngleScan method) (Calculation method) (CrystalSpaceGroup method) (DiatomScan method) (DislocationMonopole method) (DislocationPeriodicArray method) (DislocationSDVPN method) (ElasticConstantsStatic method) (EnergyCheck method) (EvsRScan method) (FreeEnergy method) (FreeEnergyLiquid method) (IsolatedAtom method) (Phonon method) (PointDefectDiffusion method) (PointDefectStatic method) (Record method) (RelaxBox method) (RelaxDynamic method) (RelaxLiquid method) (RelaxStatic method) (StackingFaultMap2D method) (StackingFaultStatic method) (SurfaceEnergyStatic method) min_cells (EvsRScan property) minimize (DislocationMonopole property) (DislocationPeriodicArray property) (ElasticConstantsStatic property) (PointDefectStatic property) (RelaxStatic property) (StackingFaultMap2D property) (StackingFaultStatic property) (SurfaceEnergyStatic property) minimize_cycles (DislocationSDVPN property) minimize_options (DislocationSDVPN property) minimize_style (DislocationSDVPN property) minimum_r (BondAngleScan property) (DiatomScan property) (EvsRScan property)

minimum_theta (BondAngleScan property) model (Record property) modelroot (BondAngleScan property) (CrystalSpaceGroup property) (DiatomScan property) (DislocationMonopole property) (DislocationPeriodicArray property) (DislocationSDVPN property) (ElasticConstantsStatic property) (EnergyCheck property) (EvsRScan property) (FreeEnergy property) (FreeEnergyLiquid property) (IsolatedAtom property) (Phonon property) (PointDefectDiffusion property) (PointDefectStatic property) (Record property) (RelaxBox property) (RelaxDynamic property) (RelaxLiquid property) (RelaxStatic property) (StackingFaultMap2D property) (StackingFaultStatic property) (SurfaceEnergyStatic property) modify_hybrid_pair_info_ufm() (in module iprPy.calculation.free_energy_liquid.free_energy_liquid) modify_pair_info_ufm() (in module iprPy.calculation.free_energy_liquid.free_energy_liquid) module iprPy iprPy.calculation iprPy.calculation.bond_angle_scan.bond_angle_scan iprPy.calculation.bond_angle_scan.BondAngleScan iprPy.calculation.crystal_space_group.crystal_space_group iprPy.calculation.crystal_space_group.CrystalSpaceGroup iprPy.calculation.diatom_scan.diatom_scan iprPy.calculation.diatom_scan.DiatomScan iprPy.calculation.dislocation_monopole.dislocation_monopole iprPy.calculation.dislocation_monopole.DislocationMonopole iprPy.calculation.dislocation_periodic_array.dislocation_periodic_array iprPy.calculation.dislocation_periodic_array.DislocationPeriodicArray iprPy.calculation.dislocation_SDVPN.dislocation_SDVPN iprPy.calculation.dislocation_SDVPN.DislocationSDVPN iprPy.calculation.E_vs_r_scan.e_vs_r_scan iprPy.calculation.E_vs_r_scan.EvsRScan iprPy.calculation.elastic_constants_static.elastic_constants_static iprPy.calculation.elastic_constants_static.ElasticConstantsStatic iprPy.calculation.energy_check.energy_check iprPy.calculation.energy_check.EnergyCheck iprPy.calculation.free_energy.free_energy iprPy.calculation.free_energy.FreeEnergy iprPy.calculation.free_energy_liquid.free_energy_liquid iprPy.calculation.free_energy_liquid.FreeEnergyLiquid iprPy.calculation.isolated_atom.isolated_atom iprPy.calculation.isolated_atom.IsolatedAtom iprPy.calculation.phonon.calc_phonon iprPy.calculation.phonon.Phonon iprPy.calculation.point_defect_diffusion.point_defect_diffusion iprPy.calculation.point_defect_diffusion.PointDefectDiffusion iprPy.calculation.point_defect_static.point_defect_static iprPy.calculation.point_defect_static.PointDefectStatic iprPy.calculation.relax_box.relax_box iprPy.calculation.relax_box.RelaxBox iprPy.calculation.relax_dynamic.relax_dynamic iprPy.calculation.relax_dynamic.RelaxDynamic iprPy.calculation.relax_liquid.relax_liquid iprPy.calculation.relax_liquid.RelaxLiquid iprPy.calculation.relax_static.relax_static iprPy.calculation.relax_static.RelaxStatic iprPy.calculation.stacking_fault_map_2D.stacking_fault_map_2D iprPy.calculation.stacking_fault_map_2D.StackingFaultMap2D iprPy.calculation.stacking_fault_static.stacking_fault_static iprPy.calculation.stacking_fault_static.StackingFaultStatic iprPy.calculation.surface_energy_static.surface_energy_static iprPy.calculation.surface_energy_static.SurfaceEnergyStatic iprPy.database iprPy.input iprPy.record iprPy.tools mongoquery() (Calculation method) (Record method) msd_values (RelaxLiquid property) msd_x_values (RelaxLiquid property) msd_y_values (RelaxLiquid property) msd_z_values (RelaxLiquid property) multikeys (BondAngleScan property) (Calculation property) (CrystalSpaceGroup property) (DiatomScan property) (DislocationMonopole property) (DislocationPeriodicArray property) (DislocationSDVPN property) (ElasticConstantsStatic property) (EnergyCheck property) (EvsRScan property) (FreeEnergy property) (FreeEnergyLiquid property) (IsolatedAtom property) (Phonon property) (PointDefectDiffusion property) (PointDefectStatic property) (RelaxBox property) (RelaxDynamic property) (RelaxLiquid property) (RelaxStatic property) (StackingFaultMap2D property) (StackingFaultStatic property) (SurfaceEnergyStatic property)

N

name (Record property) natoms (FreeEnergy property) (FreeEnergyLiquid property) (PointDefectDiffusion property) natoms_base (PointDefectStatic property) natoms_defect (PointDefectStatic property) normalizedisreg (DislocationSDVPN property) nsamples (PointDefectDiffusion property) num_a1 (StackingFaultMap2D property)

num_a2 (StackingFaultMap2D property) num_deriv_3_point() (in module iprPy.tools) number (CrystalSpaceGroup property) number_of_steps_r (BondAngleScan property) (DiatomScan property) (EvsRScan property) number_of_steps_theta (BondAngleScan property) numsamples (RelaxDynamic property) numstrains (Phonon property)

O

onlylinear (DislocationPeriodicArray property)

orphan_directory (RunManager property)

P

p (FreeEnergyLiquid property) pandasfilter() (Record method) parent_module (Calculation property) parse() (in module iprPy.input) paths (StackingFaultMap2D property) pearson (CrystalSpaceGroup property) Phonon (class in iprPy.calculation.phonon.Phonon) phonon_quasiharmonic() (in module iprPy.calculation.phonon.calc_phonon) phononcalc() (in module iprPy.calculation.phonon.calc_phonon) phonons (Phonon property) pid (RunManager property) pointdefect() (in module iprPy.calculation.point_defect_static.point_defect_static) PointDefectDiffusion (class in iprPy.calculation.point_defect_diffusion.PointDefectDiffusion) PointDefectStatic (class in iprPy.calculation.point_defect_static.PointDefectStatic) pointdiffusion() (in module iprPy.calculation.point_defect_diffusion.point_defect_diffusion) position_shift (PointDefectStatic property) potential (BondAngleScan property) (DiatomScan property) (DislocationMonopole property) (DislocationPeriodicArray property) (ElasticConstantsStatic property) (EnergyCheck property) (EvsRScan property) (FreeEnergy property) (FreeEnergyLiquid property) (IsolatedAtom property) (Phonon property) (PointDefectDiffusion property) (PointDefectStatic property) (RelaxBox property) (RelaxDynamic property) (RelaxLiquid property) (RelaxStatic property) (StackingFaultMap2D property) (StackingFaultStatic property) (SurfaceEnergyStatic property) potential_energy (EnergyCheck property) (PointDefectDiffusion property) (PointDefectStatic property) (RelaxBox property) (RelaxDynamic property) (RelaxStatic property) (SurfaceEnergyStatic property) potential_energy_base (PointDefectStatic property) (StackingFaultStatic property) (SurfaceEnergyStatic property) potential_energy_defect (DislocationMonopole property) (DislocationPeriodicArray property) (PointDefectStatic property) (StackingFaultStatic property) (SurfaceEnergyStatic property)

potential_energy_std (PointDefectDiffusion property) (RelaxDynamic property) preln (DislocationMonopole property) (DislocationPeriodicArray property) prepare() (in module iprPy.database) pressure (RelaxLiquid property) pressure_xx (RelaxBox property) (RelaxDynamic property) (RelaxStatic property) pressure_xy (RelaxBox property) (RelaxDynamic property) (RelaxStatic property) pressure_xz (RelaxBox property) (RelaxDynamic property) (RelaxStatic property) pressure_yy (RelaxBox property) (RelaxDynamic property) (RelaxStatic property) pressure_yz (RelaxBox property) (RelaxDynamic property) (RelaxStatic property) pressure_zz (RelaxBox property) (RelaxDynamic property) (RelaxStatic property) primitivecell (CrystalSpaceGroup property) process_results() (BondAngleScan method) (Calculation method) (CrystalSpaceGroup method) (DiatomScan method) (DislocationMonopole method) (DislocationPeriodicArray method) (DislocationSDVPN method) (ElasticConstantsStatic method) (EnergyCheck method) (EvsRScan method) (FreeEnergy method) (FreeEnergyLiquid method) (IsolatedAtom method) (Phonon method) (PointDefectDiffusion method) (PointDefectStatic method) (RelaxBox method) (RelaxDynamic method) (RelaxLiquid method) (RelaxStatic method) (StackingFaultMap2D method) (StackingFaultStatic method) (SurfaceEnergyStatic method)

Q

qha (Phonon property) queries (BondAngleScan property) (Calculation property) (CrystalSpaceGroup property) (DiatomScan property) (ElasticConstantsStatic property) (EvsRScan property) (FreeEnergy property) (FreeEnergyLiquid property) (Phonon property) (Record property) (RelaxDynamic property) (RelaxLiquid property)

querydoc (Record property) querynames (Record property)

R

r_values (DiatomScan property) (EvsRScan property) randomseed (DislocationMonopole property) (DislocationPeriodicArray property) (FreeEnergy property) (FreeEnergyLiquid property) (PointDefectDiffusion property) (RelaxDynamic property) (RelaxLiquid property) raw_Cij_negative (ElasticConstantsStatic property) raw_Cij_positive (ElasticConstantsStatic property) rdfcutoff (RelaxLiquid property) read_calc_file() (in module iprPy.tools) Record (class in iprPy.record) relax_box() (in module iprPy.calculation.relax_box.relax_box) relax_dynamic() (in module iprPy.calculation.relax_dynamic.relax_dynamic) relax_liquid() (in module iprPy.calculation.relax_liquid.relax_liquid) relax_static() (in module iprPy.calculation.relax_static.relax_static) relax_system() (in module iprPy.calculation.surface_energy_static.surface_energy_static) RelaxBox (class in iprPy.calculation.relax_box.RelaxBox)

RelaxDynamic (class in iprPy.calculation.relax_dynamic.RelaxDynamic) RelaxLiquid (class in iprPy.calculation.relax_liquid.RelaxLiquid) RelaxStatic (class in iprPy.calculation.relax_static.RelaxStatic) reload_model() (Record method) reset_orphans() (in module iprPy) (in module iprPy.database) restart_commands() (in module iprPy.calculation.elastic_constants_static.elastic_constants_static) restartsteps (RelaxDynamic property) (RelaxLiquid property) results_energy_unit (BondAngleScan property) results_file (BondAngleScan property) results_length_unit (BondAngleScan property) run() (Calculation method) (RunManager method) run_directory (RunManager property) runall() (RunManager method) RunManager (class in iprPy.database) runner() (in module iprPy.database) runsteps (PointDefectDiffusion property) (RelaxDynamic property) (RelaxLiquid property)

S

schoenflies (CrystalSpaceGroup property) screen_input() (in module iprPy.tools) script (Calculation property) sdvpn() (in module iprPy.calculation.dislocation_SDVPN.dislocation_SDVPN) sdvpn_solution (DislocationSDVPN property) set_values() (BondAngleScan method) (Calculation method) (CrystalSpaceGroup method) (DiatomScan method) (DislocationMonopole method) (DislocationPeriodicArray method) (DislocationSDVPN method) (ElasticConstantsStatic method) (EvsRScan method) (FreeEnergy method) (FreeEnergyLiquid method) (IsolatedAtom method) (Phonon method) (PointDefectDiffusion method) (PointDefectStatic method) (Record method) (RelaxBox method) (RelaxDynamic method) (RelaxLiquid method) (RelaxStatic method) (StackingFaultMap2D method) (StackingFaultStatic method) (SurfaceEnergyStatic method) shear_mep (StackingFaultPath property) shear_urp (StackingFaultPath property) sigma (FreeEnergyLiquid property) singularkeys (BondAngleScan property) (Calculation property) (CrystalSpaceGroup property) (DiatomScan property) (DislocationMonopole property) (DislocationPeriodicArray property) (DislocationSDVPN property) (ElasticConstantsStatic property) (EnergyCheck property) (EvsRScan property) (FreeEnergy property) (FreeEnergyLiquid property) (IsolatedAtom property) (Phonon property) (PointDefectDiffusion property) (PointDefectStatic property) (RelaxBox property) (RelaxDynamic property) (RelaxLiquid property) (RelaxStatic property) (StackingFaultMap2D property) (StackingFaultStatic property) (SurfaceEnergyStatic property) sizemults (Phonon property) spg_ucell (CrystalSpaceGroup property) spring_constants (FreeEnergy property) springsteps (FreeEnergy property) stackingfault() (in module iprPy.calculation.stacking_fault_static.stacking_fault_static)

stackingfaultmap() (in module iprPy.calculation.stacking_fault_map_2D.stacking_fault_map_2D) StackingFaultMap2D (class in iprPy.calculation.stacking_fault_map_2D.StackingFaultMap2D) StackingFaultPath (class in iprPy.calculation.stacking_fault_map_2D.StackingFaultMap2D) stackingfaultrelax() (in module iprPy.calculation.stacking_fault_map_2D.stacking_fault_map_2D) (in module iprPy.calculation.stacking_fault_static.stacking_fault_static) StackingFaultStatic (class in iprPy.calculation.stacking_fault_static.StackingFaultStatic) status (Calculation property) strainrange (ElasticConstantsStatic property) (Phonon property) (RelaxBox property) style (Calculation property) (Record property) subsets (Calculation property) surface_energy (SurfaceEnergyStatic property) surface_energy_static() (in module iprPy.calculation.surface_energy_static.surface_energy_static) SurfaceEnergyStatic (class in iprPy.calculation.surface_energy_static.SurfaceEnergyStatic) switchsteps (FreeEnergy property) (FreeEnergyLiquid property) symbols (BondAngleScan property) (DiatomScan property) symbols_base (DislocationMonopole property) (DislocationPeriodicArray property) (PointDefectStatic property) symbols_defect (DislocationMonopole property) (DislocationPeriodicArray property) (PointDefectStatic property) symmetryprecision (CrystalSpaceGroup property) (Phonon property) system (CrystalSpaceGroup property) (DislocationMonopole property) (DislocationPeriodicArray property) (DislocationSDVPN property) (ElasticConstantsStatic property) (EnergyCheck property) (EvsRScan property) (FreeEnergy property) (FreeEnergyLiquid property) (Phonon property) (PointDefectDiffusion property) (PointDefectStatic property) (RelaxBox property) (RelaxDynamic property) (RelaxLiquid property) (RelaxStatic property) (StackingFaultMap2D property) (StackingFaultStatic property) (SurfaceEnergyStatic property) system_base (PointDefectStatic property) system_defect (PointDefectStatic property) system_mods (ElasticConstantsStatic property) (EvsRScan property) (FreeEnergy property) (FreeEnergyLiquid property) (PointDefectDiffusion property) (PointDefectStatic property) (RelaxBox property) (RelaxDynamic property) (RelaxLiquid property) (RelaxStatic property)

T

tar (Record property) tau (DislocationSDVPN property) temperature (FreeEnergy property) (FreeEnergyLiquid property) (PointDefectDiffusion property) (RelaxDynamic property) (RelaxLiquid property) template (Calculation property) templatedoc (Calculation property) templatekeys (BondAngleScan property) (Calculation property) (CrystalSpaceGroup property) (DiatomScan property) (DislocationMonopole property) (DislocationPeriodicArray property) (DislocationSDVPN property) (ElasticConstantsStatic property) (EvsRScan property) (FreeEnergy property) (FreeEnergyLiquid property) (Phonon property) (PointDefectDiffusion property) (RelaxBox property) (RelaxDynamic property) (RelaxLiquid property) (RelaxStatic property) (StackingFaultMap2D property) (StackingFaultStatic property)

termtodict() (in module iprPy.input) theorydoc (Calculation property) thermal (Phonon property) thermosteps (PointDefectDiffusion property) (RelaxDynamic property) time_values (RelaxLiquid property) total_energy (PointDefectDiffusion property) (RelaxDynamic property) total_energy_std (PointDefectDiffusion property) (RelaxDynamic property)

U

units (BondAngleScan property) (CrystalSpaceGroup property) (DiatomScan property) (DislocationMonopole property) (DislocationPeriodicArray property) (DislocationSDVPN property) (ElasticConstantsStatic property) (EnergyCheck property) (EvsRScan property) (FreeEnergy property) (FreeEnergyLiquid property) (IsolatedAtom property) (Phonon property) (PointDefectDiffusion property) (PointDefectStatic property) (RelaxBox property) (RelaxDynamic property) (RelaxLiquid property) (RelaxStatic property) (StackingFaultMap2D property) (StackingFaultStatic property) (SurfaceEnergyStatic property)

update_box() (in module iprPy.calculation.relax_box.relax_box) usf_mep (StackingFaultPath property) usf_urp (StackingFaultPath property)

V

V0 (Phonon property) valid_xml() (Record method) value() (in module iprPy.input) volume (FreeEnergy property) (FreeEnergyLiquid property) (RelaxLiquid property)

volume_stderr (RelaxLiquid property) volumescan (Phonon property)

W

work (FreeEnergy property) (FreeEnergyLiquid property) work_forward (FreeEnergy property) (FreeEnergyLiquid property)

work_reverse (FreeEnergy property) (FreeEnergyLiquid property) wyckoff_fingerprint (CrystalSpaceGroup property) wyckoffs (CrystalSpaceGroup property)

X

xmax (DislocationSDVPN property) xnum (DislocationSDVPN property) xscale (DislocationSDVPN property) xsd (Record property) xsd_filename (Calculation property) (Record property) xsl (Record property)

xsl_filename (Calculation property) (Record property) xstep (DislocationSDVPN property) xy_mean (RelaxDynamic property) xy_std (RelaxDynamic property) xz_mean (RelaxDynamic property) xz_std (RelaxDynamic property)

Y

yz_mean (RelaxDynamic property)

yz_std (RelaxDynamic property)