Plots of the potential energy vs interatomic spacing, r, are shown below for all diatom sets associated with the interatomic potential. This calculation provides insights into the functional form of the potential's two-body interactions. A system consisting of only two atoms is created, and the potential energy is evaluated for the atoms separated by 0.02 Å <= r <= 6.0> Å in intervals of 0.02 Å. Two plots are shown: one for the "standard" interaction distance range, and one for small values of r. The small r plot is useful for determining whether the potential is suitable for radiation studies.
The calculation method used is available as the iprPy diatom_scan calculation method.
Clicking on the image of a plot will open an interactive version of it in a new tab. The underlying data for the plots can be downloaded by clicking on the links above each plot.
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Plots of potential energy vs interatomic spacing, r, are shown below for a number of crystal structures. The structures are generated based on the ideal atomic positions and b/a and c/a lattice parameter ratios for a given crystal prototype. The size of the system is then uniformly scaled, and the energy calculated without relaxing the system. To obtain these plots, values of r are evaluated every 0.02 Å up to 6 Å.
The calculation method used is available as the iprPy E_vs_r_scan calculation method.
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Computed lattice constants and cohesive/potential energies are displayed for a variety of crystal structures. The values displayed here are obtained using the following process.
The calculation methods used are implemented into iprPy as the following calculation styles
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Reference structure matches:
A1--Cu--fcc = mp-51, oqmd-13862, oqmd-1214540
A15--beta-W = oqmd-1214985
A2--W--bcc = mp-135, oqmd-17585, oqmd-1215163
A3'--alpha-La--double-hcp = mp-976411, oqmd-1215431
A3--Mg--hcp = mp-10173, oqmd-676289, oqmd-677955, oqmd-1215341
A4--C--dc = oqmd-1215520
A5--beta-Sn = oqmd-1215609
A6--In--bct = oqmd-1215698
prototype | method | Ecoh (eV/atom) | Epot (eV/atom) | a0 (Å) | b0 (Å) | c0 (Å) | α (degrees) | β (degrees) | γ (degrees) |
---|---|---|---|---|---|---|---|---|---|
A1--Cu--fcc | dynamic | -1.4743 | -1.6717 | 4.3658 | 4.3658 | 4.3658 | 90.0 | 90.0 | 90.0 |
A2--W--bcc | dynamic | -1.4727 | -1.6701 | 3.5018 | 3.5018 | 3.5018 | 90.0 | 90.0 | 90.0 |
A3'--alpha-La--double-hcp | dynamic | -1.4727 | -1.67 | 3.0887 | 3.0887 | 10.1106 | 90.0 | 90.0 | 120.0 |
oqmd-1215876 | box | -1.4727 | -1.67 | 4.9523 | 4.9523 | 3.0326 | 90.0 | 90.0 | 120.0 |
oqmd-1216057 | dynamic | -1.4722 | -1.6695 | 3.0893 | 3.0893 | 22.7702 | 90.0 | 90.0 | 120.0 |
oqmd-30676 | static | -1.4722 | -1.6695 | 3.0892 | 3.0892 | 22.7711 | 90.0 | 90.0 | 120.0 |
mp-567337 | box | -1.4722 | -1.6695 | 7.0036 | 7.0036 | 7.0036 | 90.0 | 90.0 | 90.0 |
mp-1018134 | box | -1.4721 | -1.6694 | 3.0895 | 3.0895 | 22.772 | 90.0 | 90.0 | 120.0 |
A3--Mg--hcp | dynamic | -1.4711 | -1.6685 | 3.0905 | 3.0905 | 5.0695 | 90.0 | 90.0 | 120.0 |
oqmd-1215252 | box | -1.4708 | -1.6682 | 3.049 | 5.4278 | 5.0693 | 90.0 | 90.0 | 90.0 |
oqmd-18968 | box | -1.4691 | -1.6665 | 6.9876 | 6.9876 | 6.9876 | 90.0 | 90.0 | 90.0 |
mp-1063005 | static | -1.4621 | -1.6594 | 4.993 | 4.993 | 2.9617 | 90.0 | 90.0 | 120.0 |
mp-1063005 | box | -1.4621 | -1.6594 | 4.9929 | 4.9929 | 2.9617 | 90.0 | 90.0 | 120.0 |
oqmd-1214807 | dynamic | -1.4582 | -1.6555 | 10.6839 | 10.6839 | 10.6839 | 90.0 | 90.0 | 90.0 |
oqmd-1214807 | box | -1.4574 | -1.6547 | 10.6824 | 10.6824 | 10.6824 | 90.0 | 90.0 | 90.0 |
oqmd-1214896 | dynamic | -1.4541 | -1.6514 | 7.565 | 7.565 | 7.565 | 90.0 | 90.0 | 90.0 |
oqmd-1214896 | box | -1.4541 | -1.6514 | 7.5645 | 7.5645 | 7.5645 | 90.0 | 90.0 | 90.0 |
A15--beta-W | dynamic | -1.4513 | -1.6486 | 5.5207 | 5.5207 | 5.5207 | 90.0 | 90.0 | 90.0 |
oqmd-1215074 | box | -1.4349 | -1.6323 | 5.1265 | 10.6304 | 3.0663 | 90.0 | 90.0 | 90.0 |
oqmd-1214718 | box | -1.4347 | -1.632 | 3.0763 | 5.1235 | 10.6277 | 90.0 | 90.0 | 90.0 |
oqmd-22487 | box | -1.4233 | -1.6206 | 5.6992 | 7.6771 | 2.874 | 90.0 | 90.0 | 90.0 |
mp-1103107 | box | -1.4225 | -1.6198 | 15.8641 | 5.7432 | 5.5015 | 90.0 | 90.0 | 90.0 |
A5--beta-Sn | static | -1.401 | -1.5983 | 5.3547 | 5.3547 | 2.925 | 90.0 | 90.0 | 90.0 |
oqmd-1277944 | static | -1.3798 | -1.5771 | 13.5859 | 13.5859 | 13.5859 | 90.0 | 90.0 | 90.0 |
oqmd-1277944 | box | -1.3795 | -1.5769 | 13.5757 | 13.5757 | 13.5757 | 90.0 | 90.0 | 90.0 |
Ah--alpha-Po--sc | static | -1.3451 | -1.5424 | 2.7502 | 2.7502 | 2.7502 | 90.0 | 90.0 | 90.0 |
A7--alpha-As | box | -1.2615 | -1.4588 | 3.7084 | 3.7084 | 11.098 | 90.0 | 90.0 | 120.0 |
mp-604313 | box | -1.2317 | -1.429 | 4.5152 | 4.5152 | 4.5152 | 90.0 | 90.0 | 90.0 |
oqmd-1215965 | box | -1.223 | -1.4203 | 4.7326 | 4.7326 | 4.968 | 90.0 | 90.0 | 120.0 |
A4--C--dc | static | -1.0352 | -1.2325 | 5.9606 | 5.9606 | 5.9606 | 90.0 | 90.0 | 90.0 |
A4--C--dc | static | -1.0341 | -1.2314 | 6.2809 | 6.2809 | 6.2809 | 90.0 | 90.0 | 90.0 |
Plots of lattice and elastic constants are shown as a function of temperature. The 0K points were taken from the Crystal Structure Predictions and the Elastic Constants Predictions sections above for the unique crystal structures relaxed with the "dynamic" method. Starting from the 0K relaxed crystal unit cells, supercell systems are created by replicating all three dimensions by the same multiplier to achieve at least 4000 atoms. The systems are then relaxed at 50K and zero pressure using 1 million NPT steps. Lattice constants are estimated by averaging the measured box dimensions. Temperatures are iteratively increased by 50 K, with each subsequent relaxation calculation starting from the final atomic configuration at the previous temperature and relaxing for another 1 million steps.
The elastic constants are calculated using the deformation-fluctuation hybrid method. Starting from the final atomic configurations of the dynamic relaxations, the system is allowed to evolve at constant volume with a Langevin thermostat. The Born matrix is computed during this run by evaluating how the atomic forces would vary due to applied linear strain fields. The elastic constants can then be estimated using the averaged Born matrix values and the averaged stresses on the system.
The calculation methods used are available as the iprPy relax_dynamic and elastic_constants_dynamic calculation methods.
Clicking on the image of a plot will open an interactive version of it in a new tab. The underlying data for the plots can be downloaded by clicking on the links above each plot.
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Plots of radial distribution functions at different temperatures and the temperature-dependent diffusion and viscosity are shown here for elemental liquids. Melt phases are constructed by starting with a 10x10x10 fcc super cell and relaxing with 50,000 NPT steps at zero pressure and a high melting temperature (3000K for most potentials and elements). Following the melt, liquid structures are relaxed by running NPT for 10,000 steps over which the temperature is dropped by 50 K, then 50,000 NPT at the target temperature to estimate the equilibrium volume, followed by 20,000 NVT steps at the averaged equilibrium volume and target temperature. Structures from the NVT run are sampled to compute the radial distribution function of the liquid at the corresponding temperature.
The final relaxed configurations at each temperature explored are used as the initial configurations for the diffusion and viscosity calculations. For diffusion, the system is integrated for 100 runs of 2,000 NVT steps during which both the mean squared displacement (MSD) and the velocity auto correlation function (VACF) are computed. From these simulations, three estimates of diffusion are computed: one from the MSD of the full 200,000 step run, one in which the MSD is reset for each short run and then averaged, and one from the VACF computed for each short run and averaged. For viscosity, the Green-Kubo method is used which is evaluated during a 1 million step NVT run.
The calculation methods used are available as the iprPy relax_liquid_redo, diffusion_liquid, and viscosity_green_kubo calculation methods.
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Estimated melting temperatures are tabulated below. The melting temperature is computed here using a two-phase solid-liquid atomic configuration. The two-phase configuration is created by starting with a crystalline system in which the c box vector is roughly twice the length of the other two box vectors. Based on some input temperature Tinit, an NPH plus a Berensen thermostat simulation is performed for 10,000 steps in which half the system is subjected to a temperature of 1.25*Tinit and the other half to a temperature of 0.5*Tinit. This is then followed by 10,000 steps during which the temperature of the two regions are both scaled to Tinit. The system is then ran for 200,000 NPH steps to equilibrate the system. For the second half of the final NPH run, the average temperature of the system is calculated and the polyhedral template matching algorithm is used to estimate the number of solid and liquid atoms for a number of configuration snapshots. If the averaged fraction of solid atoms is found to be between 0.25-0.75, then the averaged temperature provides an estimate of the melting temperature.
This calculation is iteratively performed where the Tinit value is adjusted up or down if the fraction of solid atoms is outside the range 0.25-0.75. Iterations are repeated until 10 calculations are performed that produce solid fractions in the target range, or 30 total calculations are performed.
The calculation method used is available as the iprPy melting_temperature calculation method.
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prototype | Tmelt | stderr |
---|---|---|
A2--W--bcc | 539.27 | 41.96 |
Plots of internal energy, Gibbs free energy, entropy, heat capacity and volume are shown here as a function of temperature for various crystal structures and liquid phases. The included crystal structures correspond to those in the Solid Structures vs. Temperature section, and the liquid phases to those in the Liquid Properties section. Internal energy and volume are taken from the associated structure relaxations mentioned in those previous sections. Constant pressure heat capacity is estimated using 3-point numerical derivatives of enthalpy versus temperature. Note that since all simulations done here are at 0 pressure, internal energy and enthalpy are equivalent.
The Gibbs energies of the phases are estimated using thermodynamic integration between the interatomic potential in question and a simpler model with known Gibbs free energy values. For solids, the reference model is an Einstein solid, while for liquids it is the Uhlenbeck-Ford potential. Besides a short run at the start of the solid calculations to estimate Einstein model spring constants, the two calculations proceed similarly. Starting with the final relaxation configurations, the systems are stabilized for 25,000 steps. Then, over the next 50,000 steps the potential is swapped out for the reference potential. The system is then stabilized for another 25,000 steps with the reference model before a reverse swap of 50,000 steps is performed. The simulation ends with one final 25,000 step stabilization period. From the simulation, the (ir)reversible work of transformation is estimated and used to compute the absolute Gibbs free energy of the target phase and potential. Entropy is estimated as the difference in enthalpy and Gibbs free energy and divided by temperature.
The calculation methods used are available as the iprPy relax_dynamic, relax_liquid_redo, free_energy, and free_energy_liquid calculation methods.
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