Index

Symbols

--inline command line option --lsmlib command line option --no-pysparse command line option --pyamg command line option --pysparse command line option

--scipy command line option --skfmm command line option --trilinos command line option :math:`\pi`, [1], [2] :module: viewers

A

AbstractBaseClassError AbstractMatplotlibViewer (class in fipy.viewers.matplotlibViewer.matplotlibViewer) AbstractMesh (class in fipy.meshes.abstractMesh) AbstractViewer (class in fipy.viewers.viewer) add() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) AdvectionTerm (class in fipy.terms), [1] (class in fipy.terms.advectionTerm) all() (fipy.tools.comms.commWrapper.CommWrapper method) (fipy.tools.comms.mpi4pyCommWrapper.Mpi4pyCommWrapper method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) (in module fipy.tools.numerix), [1], [2] allclose() (fipy.tools.comms.commWrapper.CommWrapper method) (fipy.tools.PhysicalField method) (fipy.tools.comms.mpi4pyCommWrapper.Mpi4pyCommWrapper method) (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) (in module fipy.tools.numerix), [1] allequal() (fipy.tools.comms.commWrapper.CommWrapper method) (fipy.tools.PhysicalField method) (fipy.tools.comms.mpi4pyCommWrapper.Mpi4pyCommWrapper method) (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) (in module fipy.tools.numerix) allgather() (fipy.tools.comms.commWrapper.CommWrapper method) (fipy.tools.comms.mpi4pyCommWrapper.Mpi4pyCommWrapper method) any() (fipy.tools.comms.commWrapper.CommWrapper method) (fipy.tools.comms.mpi4pyCommWrapper.Mpi4pyCommWrapper method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) appendChild() (fipy.tools.Vitals method) (fipy.tools.vitals.Vitals method) appendInfo() (fipy.tools.Vitals method) (fipy.tools.vitals.Vitals method)

arccos() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) arccosh() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) arcsin() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) arcsinh() (fipy.variables.Variable method) (fipy.variables.variable.Variable method) arctan arctan() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) arctan2 arctan2() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) arctanh() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) arithmeticFaceValue (fipy.variables.CellVariable attribute) (fipy.variables.ModularVariable attribute) (fipy.variables.cellVariable.CellVariable attribute) (fipy.variables.modularVariable.ModularVariable attribute) array aspect2D (fipy.meshes.abstractMesh.AbstractMesh attribute)

B

Barrier() (fipy.tools.comms.commWrapper.CommWrapper method) (fipy.tools.comms.dummyComm.DummyComm method) Base (class in package.subpackage.base) bcast() (fipy.tools.comms.commWrapper.CommWrapper method) (fipy.tools.comms.mpi4pyCommWrapper.Mpi4pyCommWrapper method)

BetaNoiseVariable (class in fipy.variables) (class in fipy.variables.betaNoiseVariable) BoundaryCondition (class in fipy.boundaryConditions.boundaryCondition) Buildbot

C

cacheMatrix cacheMatrix() (fipy.terms.term.Term method) cacheMe() (fipy.variables.Variable method) (fipy.variables.variable.Variable method) cacheRHSvector cacheRHSvector() (fipy.terms.term.Term method) calcDistanceFunction() (fipy.variables.DistanceVariable method) (fipy.variables.distanceVariable.DistanceVariable method) ceil() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) cellCenters (fipy.meshes.abstractMesh.AbstractMesh attribute) (fipy.meshes.PeriodicGrid1D attribute) (fipy.meshes.cylindricalNonUniformGrid2D.CylindricalNonUniformGrid2D attribute) (fipy.meshes.periodicGrid1D.PeriodicGrid1D attribute) cellDistanceVectors (fipy.meshes.abstractMesh.AbstractMesh attribute) cellFaceIDs (fipy.meshes.abstractMesh.AbstractMesh attribute) cellInterfaceAreas (fipy.variables.DistanceVariable attribute) (fipy.variables.distanceVariable.DistanceVariable attribute) CellTerm (class in fipy.terms.cellTerm) cellToFaceDistanceVectors (fipy.meshes.abstractMesh.AbstractMesh attribute) CellVariable, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10] (class in fipy.variables) (class in fipy.variables.cellVariable) cellVolumeAverage (fipy.variables.CellVariable attribute) (fipy.variables.cellVariable.CellVariable attribute) cellVolumes (fipy.meshes.abstractMesh.AbstractMesh attribute) (fipy.meshes.cylindricalNonUniformGrid2D.CylindricalNonUniformGrid2D attribute) (fipy.meshes.cylindricalUniformGrid1D.CylindricalUniformGrid1D attribute) (fipy.meshes.cylindricalUniformGrid2D.CylindricalUniformGrid2D attribute) CentralDifferenceConvectionTerm (class in fipy.terms) (class in fipy.terms.centralDiffConvectionTerm) clip_data() (fipy.viewers.mayaviViewer.mayaviDaemon.MayaviDaemon method) command line option --inline --lsmlib --no-pysparse --pyamg --pysparse --scipy --skfmm --trilinos

CommWrapper (class in fipy.tools.comms.commWrapper) conjugate() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) constrain() (fipy.variables.CellVariable method) (fipy.variables.Variable method) (fipy.variables.cellVariable.CellVariable method) (fipy.variables.variable.Variable method) Constraint (class in fipy.boundaryConditions) (class in fipy.boundaryConditions.constraint) constraints (fipy.variables.Variable attribute) (fipy.variables.variable.Variable attribute) ConvectionTerm (in module fipy.terms) conversionFactorTo() (fipy.tools.dimensions.physicalField.PhysicalUnit method) conversionTupleTo() (fipy.tools.dimensions.physicalField.PhysicalUnit method) convertToUnit() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) copy() (fipy.terms.term.Term method) (fipy.tools.PhysicalField method) (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.variables.CellVariable method) (fipy.variables.FaceVariable method) (fipy.variables.SurfactantVariable method) (fipy.variables.Variable method) (fipy.variables.cellVariable.CellVariable method) (fipy.variables.faceVariable.FaceVariable method) (fipy.variables.noiseVariable.NoiseVariable method) (fipy.variables.surfactantVariable.SurfactantVariable method) (fipy.variables.variable.Variable method) Copy_script (class in fipy.tools.copy_script) cos() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) cosh() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) CylindricalGrid1D() (in module fipy.meshes) (in module fipy.meshes.factoryMeshes) CylindricalGrid2D() (in module fipy.meshes) (in module fipy.meshes.factoryMeshes) CylindricalNonUniformGrid1D (class in fipy.meshes.cylindricalNonUniformGrid1D) CylindricalNonUniformGrid2D (class in fipy.meshes.cylindricalNonUniformGrid2D) CylindricalUniformGrid1D (class in fipy.meshes.cylindricalUniformGrid1D) CylindricalUniformGrid2D (class in fipy.meshes.cylindricalUniformGrid2D)

D

DefaultAsymmetricSolver (in module fipy.solvers) (in module fipy.solvers.pyAMG) (in module fipy.solvers.pysparse) (in module fipy.solvers.scipy) (in module fipy.solvers.trilinos) DefaultSolver (in module fipy.solvers) (in module fipy.solvers.pyAMG) (in module fipy.solvers.pysparse) (in module fipy.solvers.scipy) (in module fipy.solvers.trilinos) description (fipy.tools.copy_script.Copy_script attribute) (fipy.tools.performance.efficiency_test.Efficiency_test attribute) dictToXML() (fipy.tools.Vitals method) (fipy.tools.vitals.Vitals method) DiffusionTerm (class in fipy.terms) (class in fipy.terms.diffusionTerm) DiffusionTermCorrection (class in fipy.terms), [1] (class in fipy.terms.diffusionTerm) (class in fipy.terms.diffusionTermCorrection) DiffusionTermNoCorrection (class in fipy.terms), [1] (class in fipy.terms.diffusionTerm) (class in fipy.terms.diffusionTermNoCorrection) DistanceVariable (class in fipy.variables) (class in fipy.variables.distanceVariable) divergence (fipy.variables.FaceVariable attribute) (fipy.variables.faceVariable.FaceVariable attribute)

divide() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) DomDecompPreconditioner (class in fipy.solvers.trilinos) (class in fipy.solvers.trilinos.preconditioners) (class in fipy.solvers.trilinos.preconditioners.domDecompPreconditioner) dontCacheMe() (fipy.variables.Variable method) (fipy.variables.variable.Variable method) dot() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) (in module fipy.tools.numerix), [1] DummyComm (class in fipy.tools.comms.dummyComm) DummySolver (in module fipy.solvers) (in module fipy.solvers.pyAMG) (in module fipy.solvers.pysparse) (in module fipy.solvers.scipy) (in module fipy.solvers.trilinos) DummyViewer (class in fipy.viewers) DYLD_LIBRARY_PATH

E

Efficiency_test (class in fipy.tools.performance.efficiency_test) environment variable DYLD_LIBRARY_PATH FIPY_DISPLAY_MATRIX FIPY_INCLUDE_NUMERIX_ALL, [1] FIPY_INLINE FIPY_INLINE_COMMENT FIPY_SOLVERS, [1], [2] FIPY_VERBOSE_SOLVER FIPY_VIEWER LD_LIBRARY_PATH PATH PYTHONPATH, [1], [2], [3], [4] examples.cahnHilliard.mesh2DCoupled (module) examples.cahnHilliard.sphere (module) examples.convection.exponential1D.mesh1D (module) examples.convection.exponential1DSource.mesh1D (module) examples.convection.robin (module) examples.convection.source (module) examples.diffusion.anisotropy (module) examples.diffusion.circle (module) examples.diffusion.coupled (module) examples.diffusion.electrostatics (module) examples.diffusion.mesh1D (module) examples.diffusion.mesh20x20 (module) examples.diffusion.nthOrder.input4thOrder1D (module) examples.flow.stokesCavity (module) examples.levelSet.advection.circle (module) examples.levelSet.advection.mesh1D (module) examples.levelSet.distanceFunction.circle (module) examples.levelSet.distanceFunction.mesh1D (module) examples.levelSet.electroChem.gold (module) examples.levelSet.electroChem.howToWriteAScript (module) examples.levelSet.electroChem.leveler (module) examples.levelSet.electroChem.simpleTrenchSystem (module)

examples.phase.anisotropy (module) examples.phase.binaryCoupled (module) examples.phase.impingement.mesh20x20 (module) examples.phase.impingement.mesh40x1 (module) examples.phase.polyxtal (module) examples.phase.polyxtalCoupled (module) examples.phase.quaternary (module) examples.phase.simple (module) examples.reactiveWetting.liquidVapor1D (module) examples.updating.update0_1to1_0 (module) examples.updating.update1_0to2_0 (module) examples.updating.update2_0to3_0 (module) execButNoTest() (in module fipy.tests.doctestPlus) exp, [1], [2], [3], [4], [5] exp() (fipy.variables.Variable method) (fipy.variables.variable.Variable method) ExplicitDiffusionTerm, [1], [2] (class in fipy.terms) (class in fipy.terms.explicitDiffusionTerm) ExplicitUpwindConvectionTerm (class in fipy.terms) (class in fipy.terms.explicitUpwindConvectionTerm) ExplicitVariableError ExponentialConvectionTerm (class in fipy.terms) (class in fipy.terms.exponentialConvectionTerm) ExponentialNoiseVariable (class in fipy.variables) (class in fipy.variables.exponentialNoiseVariable) extendVariable() (fipy.variables.DistanceVariable method) (fipy.variables.distanceVariable.DistanceVariable method) exteriorFaces (fipy.meshes.abstractMesh.AbstractMesh attribute) (fipy.meshes.uniformGrid1D.UniformGrid1D attribute) extrude() (fipy.meshes.mesh2D.Mesh2D method)

F

faceCellIDs (fipy.meshes.uniformGrid1D.UniformGrid1D attribute) (fipy.meshes.uniformGrid2D.UniformGrid2D attribute) (fipy.meshes.uniformGrid3D.UniformGrid3D attribute) faceCenters (fipy.meshes.abstractMesh.AbstractMesh attribute) (fipy.meshes.cylindricalNonUniformGrid2D.CylindricalNonUniformGrid2D attribute) faceGrad (fipy.variables.CellVariable attribute) (fipy.variables.ModularVariable attribute) (fipy.variables.cellVariable.CellVariable attribute) (fipy.variables.modularVariable.ModularVariable attribute) faceGradAverage (fipy.variables.CellVariable attribute) (fipy.variables.cellVariable.CellVariable attribute) faceGradNoMod (fipy.variables.ModularVariable attribute) (fipy.variables.modularVariable.ModularVariable attribute) facesBack (fipy.meshes.abstractMesh.AbstractMesh attribute) facesBottom (fipy.meshes.abstractMesh.AbstractMesh attribute) facesDown (fipy.meshes.abstractMesh.AbstractMesh attribute) facesFront (fipy.meshes.abstractMesh.AbstractMesh attribute) facesLeft (fipy.meshes.abstractMesh.AbstractMesh attribute) facesRight (fipy.meshes.abstractMesh.AbstractMesh attribute) facesTop (fipy.meshes.abstractMesh.AbstractMesh attribute) facesUp (fipy.meshes.abstractMesh.AbstractMesh attribute) FaceTerm (class in fipy.terms.faceTerm) faceValue (fipy.variables.CellVariable attribute) (fipy.variables.cellVariable.CellVariable attribute) FaceVariable (class in fipy.variables) (class in fipy.variables.faceVariable) faceVertexIDs (fipy.meshes.uniformGrid2D.UniformGrid2D attribute) (fipy.meshes.uniformGrid3D.UniformGrid3D attribute) failFn() (fipy.steppers.stepper.Stepper static method) figaspect() (fipy.viewers.matplotlibViewer.matplotlibViewer.AbstractMatplotlibViewer method) finalize_options() (fipy.tools.copy_script.Copy_script method) (fipy.tools.performance.efficiency_test.Efficiency_test method) FiPy fipy.boundaryConditions (module) fipy.boundaryConditions.boundaryCondition (module) fipy.boundaryConditions.constraint (module) fipy.boundaryConditions.fixedFlux (module) fipy.boundaryConditions.fixedValue (module) fipy.boundaryConditions.nthOrderBoundaryCondition (module) fipy.boundaryConditions.test (module) fipy.matrices.offsetSparseMatrix (module) fipy.matrices.pysparseMatrix (module) fipy.matrices.scipyMatrix (module) fipy.matrices.sparseMatrix (module) fipy.matrices.test (module) fipy.matrices.trilinosMatrix (module) fipy.meshes (module) fipy.meshes.abstractMesh (module) fipy.meshes.builders (module) fipy.meshes.builders.abstractGridBuilder (module) fipy.meshes.builders.grid1DBuilder (module) fipy.meshes.builders.grid2DBuilder (module) fipy.meshes.builders.grid3DBuilder (module) fipy.meshes.builders.periodicGrid1DBuilder (module) fipy.meshes.builders.utilityClasses (module) fipy.meshes.cylindricalNonUniformGrid1D (module) fipy.meshes.cylindricalNonUniformGrid2D (module) fipy.meshes.cylindricalUniformGrid1D (module) fipy.meshes.cylindricalUniformGrid2D (module) fipy.meshes.factoryMeshes (module) fipy.meshes.gmshMesh (module) fipy.meshes.grid1D (module) fipy.meshes.grid2D (module) fipy.meshes.grid3D (module) fipy.meshes.mesh (module) fipy.meshes.mesh1D (module) fipy.meshes.mesh2D (module) fipy.meshes.nonUniformGrid1D (module) fipy.meshes.nonUniformGrid2D (module) fipy.meshes.nonUniformGrid3D (module) fipy.meshes.numMesh.cylindricalUniformGrid1D (module) fipy.meshes.numMesh.cylindricalUniformGrid2D (module) fipy.meshes.numMesh.deprecatedWarning (module) fipy.meshes.numMesh.gmshImport (module) fipy.meshes.numMesh.grid1D (module) fipy.meshes.numMesh.grid2D (module) fipy.meshes.numMesh.grid3D (module) fipy.meshes.numMesh.periodicGrid1D (module) fipy.meshes.numMesh.periodicGrid2D (module) fipy.meshes.numMesh.skewedGrid2D (module) fipy.meshes.numMesh.tri2D (module) fipy.meshes.numMesh.uniformGrid1D (module) fipy.meshes.numMesh.uniformGrid2D (module) fipy.meshes.numMesh.uniformGrid3D (module) fipy.meshes.periodicGrid1D (module) fipy.meshes.periodicGrid2D (module) fipy.meshes.representations.abstractRepresentation (module) fipy.meshes.representations.gridRepresentation (module) fipy.meshes.representations.meshRepresentation (module) fipy.meshes.skewedGrid2D (module) fipy.meshes.test (module) fipy.meshes.topologies.abstractTopology (module) fipy.meshes.topologies.gridTopology (module) fipy.meshes.topologies.meshTopology (module) fipy.meshes.tri2D (module) fipy.meshes.uniformGrid (module) fipy.meshes.uniformGrid1D (module) fipy.meshes.uniformGrid2D (module) fipy.meshes.uniformGrid3D (module) fipy.solvers (module) fipy.solvers.pyAMG (module) fipy.solvers.pyAMG.linearCGSSolver (module) fipy.solvers.pyAMG.linearGeneralSolver (module) fipy.solvers.pyAMG.linearGMRESSolver (module) fipy.solvers.pyAMG.linearLUSolver (module) fipy.solvers.pyAMG.linearPCGSolver (module) fipy.solvers.pyAMG.preconditioners (module) fipy.solvers.pyAMG.preconditioners.smoothedAggregationPreconditioner (module) fipy.solvers.pysparse (module) fipy.solvers.pysparse.linearCGSSolver (module) fipy.solvers.pysparse.linearGMRESSolver (module) fipy.solvers.pysparse.linearJORSolver (module) fipy.solvers.pysparse.linearLUSolver (module) fipy.solvers.pysparse.linearPCGSolver (module) fipy.solvers.pysparse.preconditioners (module) fipy.solvers.pysparse.preconditioners.jacobiPreconditioner (module) fipy.solvers.pysparse.preconditioners.preconditioner (module) fipy.solvers.pysparse.preconditioners.ssorPreconditioner (module) fipy.solvers.pysparse.pysparseSolver (module) fipy.solvers.pysparseMatrixSolver (module) fipy.solvers.scipy (module) fipy.solvers.scipy.linearBicgstabSolver (module) fipy.solvers.scipy.linearCGSSolver (module) fipy.solvers.scipy.linearGMRESSolver (module) fipy.solvers.scipy.linearLUSolver (module) fipy.solvers.scipy.linearPCGSolver (module) fipy.solvers.scipy.scipyKrylovSolver (module) fipy.solvers.scipy.scipySolver (module) fipy.solvers.solver (module) fipy.solvers.test (module) fipy.solvers.trilinos (module) fipy.solvers.trilinos.linearBicgstabSolver (module) fipy.solvers.trilinos.linearCGSSolver (module) fipy.solvers.trilinos.linearGMRESSolver (module) fipy.solvers.trilinos.linearLUSolver (module) fipy.solvers.trilinos.linearPCGSolver (module) fipy.solvers.trilinos.preconditioners (module) fipy.solvers.trilinos.preconditioners.domDecompPreconditioner (module) fipy.solvers.trilinos.preconditioners.icPreconditioner (module) fipy.solvers.trilinos.preconditioners.jacobiPreconditioner (module) fipy.solvers.trilinos.preconditioners.multilevelDDMLPreconditioner (module) fipy.solvers.trilinos.preconditioners.multilevelDDPreconditioner (module) fipy.solvers.trilinos.preconditioners.multilevelNSSAPreconditioner (module) fipy.solvers.trilinos.preconditioners.multilevelSAPreconditioner (module) fipy.solvers.trilinos.preconditioners.multilevelSGSPreconditioner (module) fipy.solvers.trilinos.preconditioners.multilevelSolverSmootherPreconditioner (module) fipy.solvers.trilinos.preconditioners.preconditioner (module) fipy.solvers.trilinos.trilinosAztecOOSolver (module) fipy.solvers.trilinos.trilinosMLTest (module) fipy.solvers.trilinos.trilinosNonlinearSolver (module) fipy.solvers.trilinos.trilinosSolver (module) fipy.steppers (module) fipy.steppers.pidStepper (module) fipy.steppers.pseudoRKQSStepper (module) fipy.steppers.stepper (module) fipy.terms (module) fipy.terms.abstractBinaryTerm (module) fipy.terms.abstractConvectionTerm (module) fipy.terms.abstractDiffusionTerm (module)

fipy.terms.abstractUpwindConvectionTerm (module) fipy.terms.advectionTerm (module) fipy.terms.asymmetricConvectionTerm (module) fipy.terms.binaryTerm (module) fipy.terms.cellTerm (module) fipy.terms.centralDiffConvectionTerm (module) fipy.terms.coupledBinaryTerm (module) fipy.terms.diffusionTerm (module) fipy.terms.diffusionTermCorrection (module) fipy.terms.diffusionTermNoCorrection (module) fipy.terms.explicitDiffusionTerm (module) fipy.terms.explicitSourceTerm (module) fipy.terms.explicitUpwindConvectionTerm (module) fipy.terms.exponentialConvectionTerm (module) fipy.terms.faceTerm (module) fipy.terms.firstOrderAdvectionTerm (module) fipy.terms.hybridConvectionTerm (module) fipy.terms.implicitDiffusionTerm (module) fipy.terms.implicitSourceTerm (module) fipy.terms.nonDiffusionTerm (module) fipy.terms.powerLawConvectionTerm (module) fipy.terms.residualTerm (module) fipy.terms.sourceTerm (module) fipy.terms.term (module) fipy.terms.test (module) fipy.terms.transientTerm (module) fipy.terms.unaryTerm (module) fipy.terms.upwindConvectionTerm (module) fipy.terms.vanLeerConvectionTerm (module) fipy.test (module) fipy.tests (module) fipy.tests.doctestPlus (module) fipy.tests.lateImportTest (module) fipy.tests.testBase (module) fipy.tests.testClass (module) fipy.tests.testProgram (module) fipy.tools (module) fipy.tools.comms.commWrapper (module) fipy.tools.comms.dummyComm (module) fipy.tools.comms.mpi4pyCommWrapper (module) fipy.tools.comms.serialCommWrapper (module) fipy.tools.copy_script (module) fipy.tools.debug (module) fipy.tools.decorators (module) fipy.tools.dimensions.DictWithDefault (module) fipy.tools.dimensions.NumberDict (module) fipy.tools.dimensions.physicalField (module) fipy.tools.dump module fipy.tools.dump (module) fipy.tools.inline (module) fipy.tools.numerix (module) fipy.tools.parser module, [1] fipy.tools.parser (module) fipy.tools.performance.efficiency_test (module) fipy.tools.performance.efficiencyTestGenerator (module) fipy.tools.performance.efficiencyTestHistory (module) fipy.tools.performance.memoryLeak (module) fipy.tools.performance.memoryLogger (module) fipy.tools.performance.memoryUsage (module) fipy.tools.test (module) fipy.tools.vector (module) fipy.tools.vitals (module) fipy.variables (module) fipy.variables.addOverFacesVariable (module) fipy.variables.arithmeticCellToFaceVariable (module) fipy.variables.betaNoiseVariable (module) fipy.variables.binaryOperatorVariable (module) fipy.variables.cellToFaceVariable (module) fipy.variables.cellVariable (module) fipy.variables.cellVariable.CellVariable object fipy.variables.cellVolumeAverageVariable (module) fipy.variables.constant (module) fipy.variables.constraintMask (module) fipy.variables.coupledCellVariable (module) fipy.variables.distanceVariable (module) fipy.variables.exponentialNoiseVariable (module) fipy.variables.faceGradContributionsVariable (module) fipy.variables.faceGradVariable (module) fipy.variables.faceVariable (module) fipy.variables.gammaNoiseVariable (module) fipy.variables.gaussCellGradVariable (module) fipy.variables.gaussianNoiseVariable (module) fipy.variables.harmonicCellToFaceVariable (module) fipy.variables.histogramVariable (module) fipy.variables.interfaceAreaVariable (module) fipy.variables.interfaceFlagVariable (module) fipy.variables.leastSquaresCellGradVariable (module) fipy.variables.levelSetDiffusionVariable (module) fipy.variables.meshVariable (module) fipy.variables.minmodCellToFaceVariable (module) fipy.variables.modCellGradVariable (module) fipy.variables.modCellToFaceVariable (module) fipy.variables.modFaceGradVariable (module) fipy.variables.modPhysicalField (module) fipy.variables.modularVariable (module) fipy.variables.noiseVariable (module) fipy.variables.operatorVariable (module) fipy.variables.scharfetterGummelFaceVariable (module) fipy.variables.surfactantConvectionVariable (module) fipy.variables.surfactantVariable (module) fipy.variables.test (module) fipy.variables.unaryOperatorVariable (module) fipy.variables.uniformNoiseVariable (module) fipy.variables.variable (module) fipy.viewers module, [1], [2], [3], [4], [5], [6], [7], [8], [9] fipy.viewers (module) fipy.viewers.gistViewer (module) fipy.viewers.gistViewer.gist1DViewer (module) fipy.viewers.gistViewer.gist2DViewer (module) fipy.viewers.gistViewer.gistVectorViewer (module) fipy.viewers.gistViewer.gistViewer (module) fipy.viewers.gistViewer.test (module) fipy.viewers.gnuplotViewer (module) fipy.viewers.gnuplotViewer.gnuplot1DViewer (module) fipy.viewers.gnuplotViewer.gnuplot2DViewer (module) fipy.viewers.gnuplotViewer.gnuplotViewer (module) fipy.viewers.gnuplotViewer.test (module) fipy.viewers.matplotlibViewer (module) fipy.viewers.matplotlibViewer.matplotlib1DViewer (module) fipy.viewers.matplotlibViewer.matplotlib2DGridContourViewer (module) fipy.viewers.matplotlibViewer.matplotlib2DGridViewer (module) fipy.viewers.matplotlibViewer.matplotlib2DViewer (module) fipy.viewers.matplotlibViewer.matplotlibSparseMatrixViewer (module) fipy.viewers.matplotlibViewer.matplotlibVectorViewer (module) fipy.viewers.matplotlibViewer.matplotlibViewer (module) fipy.viewers.matplotlibViewer.test (module) fipy.viewers.mayaviViewer (module) fipy.viewers.mayaviViewer.mayaviClient (module) fipy.viewers.mayaviViewer.mayaviDaemon (module) fipy.viewers.mayaviViewer.test (module) fipy.viewers.multiViewer (module) fipy.viewers.test (module) fipy.viewers.testinteractive (module) fipy.viewers.tsvViewer (module) fipy.viewers.tsvViewer.TSVViewer object fipy.viewers.viewer (module) fipy.viewers.vtkViewer (module) fipy.viewers.vtkViewer.test (module) fipy.viewers.vtkViewer.vtkCellViewer (module) fipy.viewers.vtkViewer.vtkFaceViewer (module) fipy.viewers.vtkViewer.vtkViewer (module) FIPY_INCLUDE_NUMERIX_ALL FIPY_SOLVERS, [1] FirstOrderAdvectionTerm (class in fipy.terms), [1] (class in fipy.terms.firstOrderAdvectionTerm) FixedFlux (class in fipy.boundaryConditions) (class in fipy.boundaryConditions.fixedFlux) FixedValue, [1] (class in fipy.boundaryConditions) (class in fipy.boundaryConditions.fixedValue) floor() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method)

G

GammaNoiseVariable (class in fipy.variables) (class in fipy.variables.gammaNoiseVariable) gaussGrad (fipy.variables.CellVariable attribute) (fipy.variables.cellVariable.CellVariable attribute) GaussianNoiseVariable (class in fipy.variables) (class in fipy.variables.gaussianNoiseVariable) GeneralSolver (in module fipy.solvers) (in module fipy.solvers.pyAMG) (in module fipy.solvers.pysparse) (in module fipy.solvers.scipy) (in module fipy.solvers.trilinos) getArithmeticFaceValue() (fipy.variables.CellVariable method) (fipy.variables.cellVariable.CellVariable method) getCellCenters() (fipy.meshes.abstractMesh.AbstractMesh method) getCellInterfaceAreas() (fipy.variables.DistanceVariable method) (fipy.variables.distanceVariable.DistanceVariable method) getCellVolumeAverage() (fipy.variables.CellVariable method) (fipy.variables.cellVariable.CellVariable method) getCellVolumes() (fipy.meshes.abstractMesh.AbstractMesh method) getDefaultSolver() (fipy.terms.term.Term method) getDim() (fipy.meshes.abstractMesh.AbstractMesh method) getDivergence() (fipy.variables.FaceVariable method) (fipy.variables.faceVariable.FaceVariable method) getExteriorFaces() (fipy.meshes.abstractMesh.AbstractMesh method) getFaceCellIDs() (fipy.meshes.abstractMesh.AbstractMesh method) getFaceCenters() (fipy.meshes.abstractMesh.AbstractMesh method) getFaceGrad() (fipy.variables.CellVariable method) (fipy.variables.cellVariable.CellVariable method) getFaceGradAverage() (fipy.variables.CellVariable method) (fipy.variables.cellVariable.CellVariable method) getFaceGradNoMod() (fipy.variables.ModularVariable method) (fipy.variables.modularVariable.ModularVariable method) getFacesBack() (fipy.meshes.abstractMesh.AbstractMesh method) getFacesBottom() (fipy.meshes.abstractMesh.AbstractMesh method) getFacesDown() (fipy.meshes.abstractMesh.AbstractMesh method) getFacesFront() (fipy.meshes.abstractMesh.AbstractMesh method) getFacesLeft() (fipy.meshes.abstractMesh.AbstractMesh method) getFacesRight() (fipy.meshes.abstractMesh.AbstractMesh method) getFacesTop() (fipy.meshes.abstractMesh.AbstractMesh method) getFacesUp() (fipy.meshes.abstractMesh.AbstractMesh method) getFaceValue() (fipy.variables.CellVariable method) (fipy.variables.cellVariable.CellVariable method) getGaussGrad() (fipy.variables.CellVariable method) (fipy.variables.cellVariable.CellVariable method) getGrad() (fipy.variables.CellVariable method) (fipy.variables.cellVariable.CellVariable method) getHarmonicFaceValue() (fipy.variables.CellVariable method) (fipy.variables.cellVariable.CellVariable method) getInterfaceVar() (fipy.variables.SurfactantVariable method) (fipy.variables.surfactantVariable.SurfactantVariable method) getInteriorFaceCellIDs() (fipy.meshes.abstractMesh.AbstractMesh method) getInteriorFaceIDs() (fipy.meshes.abstractMesh.AbstractMesh method) getInteriorFaces() (fipy.meshes.abstractMesh.AbstractMesh method) getLeastSquaresGrad() (fipy.variables.CellVariable method) (fipy.variables.cellVariable.CellVariable method) getLSMshape() (fipy.variables.DistanceVariable method) (fipy.variables.distanceVariable.DistanceVariable method) getMag() (fipy.variables.Variable method) (fipy.variables.variable.Variable method) getMatrix getMatrix() (fipy.terms.term.Term method) getMinmodFaceValue() (fipy.variables.CellVariable method) (fipy.variables.cellVariable.CellVariable method)

getName() (fipy.variables.Variable method) (fipy.variables.variable.Variable method) getNearestCell() (fipy.meshes.abstractMesh.AbstractMesh method) getNumberOfCells() (fipy.meshes.abstractMesh.AbstractMesh method) getNumericValue() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) getOld() (fipy.variables.CellVariable method) (fipy.variables.cellVariable.CellVariable method) getPhysicalShape() (fipy.meshes.abstractMesh.AbstractMesh method) getRHSvector getRHSvector() (fipy.terms.term.Term method) getScale() (fipy.meshes.abstractMesh.AbstractMesh method) getsctype() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) getsetDeprecated() (in module fipy.tools.decorators) getShape() (fipy.meshes.abstractMesh.AbstractMesh method) (fipy.tools.PhysicalField method) (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) (in module fipy.tools.numerix) getSubscribedVariables() (fipy.variables.Variable method) (fipy.variables.variable.Variable method) getUnit() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) (in module fipy.tools.numerix) getValue() (fipy.variables.Variable method) (fipy.variables.variable.Variable method) getVars() (fipy.viewers.viewer.AbstractViewer method) getVertexCoords() (fipy.meshes.abstractMesh.AbstractMesh method) getViewers() (fipy.viewers.MultiViewer method) (fipy.viewers.multiViewer.MultiViewer method) Gist1DViewer GistViewer() (in module fipy.viewers) (in module fipy.viewers.gistViewer) globalValue (fipy.variables.CellVariable attribute) (fipy.variables.FaceVariable attribute) (fipy.variables.cellVariable.CellVariable attribute) (fipy.variables.faceVariable.FaceVariable attribute) Gmsh gmsh, [1], [2] Gmsh2D (class in fipy.meshes) (class in fipy.meshes.gmshMesh) Gmsh2DIn3DSpace (class in fipy.meshes) (class in fipy.meshes.gmshMesh) Gmsh3D (class in fipy.meshes) (class in fipy.meshes.gmshMesh) GmshGrid2D (class in fipy.meshes) (class in fipy.meshes.gmshMesh) GmshGrid3D (class in fipy.meshes) (class in fipy.meshes.gmshMesh) GmshImporter2D (class in fipy.meshes) (class in fipy.meshes.gmshMesh) GmshImporter2DIn3DSpace (class in fipy.meshes) (class in fipy.meshes.gmshMesh) GmshImporter3D (class in fipy.meshes) (class in fipy.meshes.gmshMesh) GnuplotViewer() (in module fipy.viewers) (in module fipy.viewers.gnuplotViewer) grad (fipy.variables.CellVariable attribute) (fipy.variables.ModularVariable attribute) (fipy.variables.cellVariable.CellVariable attribute) (fipy.variables.modularVariable.ModularVariable attribute) Grid1D, [1], [2], [3], [4], [5], [6], [7], [8] Grid1D() (in module fipy.meshes) (in module fipy.meshes.factoryMeshes) Grid2D, [1], [2], [3], [4], [5], [6] Grid2D() (in module fipy.meshes) (in module fipy.meshes.factoryMeshes) Grid2DGistViewer Grid3D() (in module fipy.meshes) (in module fipy.meshes.factoryMeshes)

H

harmonicFaceValue (fipy.variables.CellVariable attribute) (fipy.variables.cellVariable.CellVariable attribute) HistogramVariable (class in fipy.variables) (class in fipy.variables.histogramVariable)

HybridConvectionTerm (class in fipy.terms) (class in fipy.terms.hybridConvectionTerm)

I

ICPreconditioner (class in fipy.solvers.trilinos) (class in fipy.solvers.trilinos.preconditioners) (class in fipy.solvers.trilinos.preconditioners.icPreconditioner) IllConditionedPreconditionerWarning, [1] ImplicitDiffusionTerm (in module fipy.terms) (in module fipy.terms.implicitDiffusionTerm) ImplicitSourceTerm, [1], [2] (class in fipy.terms) (class in fipy.terms.implicitSourceTerm) inBaseUnits() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) IncorrectSolutionVariable indices() (in module fipy.tools.numerix), [1] inDimensionless() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) initialize_options() (fipy.tools.copy_script.Copy_script method) (fipy.tools.performance.efficiency_test.Efficiency_test method) inRadians() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) inSIUnits() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) interfaceVar (fipy.variables.SurfactantVariable attribute) (fipy.variables.surfactantVariable.SurfactantVariable attribute) interiorFaceCellIDs (fipy.meshes.abstractMesh.AbstractMesh attribute) interiorFaceIDs (fipy.meshes.abstractMesh.AbstractMesh attribute)

interiorFaces (fipy.meshes.abstractMesh.AbstractMesh attribute) inUnitsOf() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) IPython isAngle() (fipy.tools.dimensions.physicalField.PhysicalUnit method) isclose() (in module fipy.tools.numerix) isCompatible() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.tools.dimensions.physicalField.PhysicalUnit method) isDimensionless() (fipy.tools.dimensions.physicalField.PhysicalUnit method) isDimensionlessOrAngle() (fipy.tools.dimensions.physicalField.PhysicalUnit method) isFloat() (in module fipy.tools.numerix) isInt() (in module fipy.tools.numerix) isInverseAngle() (fipy.tools.dimensions.physicalField.PhysicalUnit method) itemset() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) itemsize (fipy.tools.dimensions.physicalField.PhysicalField attribute) (fipy.tools.PhysicalField attribute) (fipy.variables.Variable attribute) (fipy.variables.variable.Variable attribute) Iterator

J

JacobiPreconditioner (class in fipy.solvers) (class in fipy.solvers.pysparse) (class in fipy.solvers.pysparse.preconditioners) (class in fipy.solvers.pysparse.preconditioners.jacobiPreconditioner) (class in fipy.solvers.trilinos) (class in fipy.solvers.trilinos.preconditioners) (class in fipy.solvers.trilinos.preconditioners.jacobiPreconditioner) justErrorVector() (fipy.terms.term.Term method)

justResidualVector() (fipy.terms.term.Term method)

L

L1error() (in module fipy.steppers) L1norm() (in module fipy.tools.numerix) L2error() (in module fipy.steppers) L2norm() (in module fipy.tools.numerix) LD_LIBRARY_PATH leastSquaresGrad (fipy.variables.CellVariable attribute) (fipy.variables.cellVariable.CellVariable attribute) LinearBicgstabSolver (class in fipy.solvers.scipy) (class in fipy.solvers.scipy.linearBicgstabSolver) (class in fipy.solvers.trilinos) (class in fipy.solvers.trilinos.linearBicgstabSolver) LinearCGSSolver (class in fipy.solvers) (class in fipy.solvers.pyAMG) (class in fipy.solvers.pyAMG.linearCGSSolver) (class in fipy.solvers.pysparse) (class in fipy.solvers.pysparse.linearCGSSolver) (class in fipy.solvers.scipy) (class in fipy.solvers.scipy.linearCGSSolver) (class in fipy.solvers.trilinos) (class in fipy.solvers.trilinos.linearCGSSolver) LinearGeneralSolver (class in fipy.solvers.pyAMG) (class in fipy.solvers.pyAMG.linearGeneralSolver) LinearGMRESSolver (class in fipy.solvers) (class in fipy.solvers.pyAMG) (class in fipy.solvers.pyAMG.linearGMRESSolver) (class in fipy.solvers.pysparse) (class in fipy.solvers.pysparse.linearGMRESSolver) (class in fipy.solvers.scipy) (class in fipy.solvers.scipy.linearGMRESSolver) (class in fipy.solvers.trilinos) (class in fipy.solvers.trilinos.linearGMRESSolver)

LinearJORSolver (class in fipy.solvers) (class in fipy.solvers.pysparse) (class in fipy.solvers.pysparse.linearJORSolver) LinearLUSolver, [1] (class in fipy.solvers) (class in fipy.solvers.pyAMG) (class in fipy.solvers.pyAMG.linearLUSolver) (class in fipy.solvers.pysparse) (class in fipy.solvers.pysparse.linearLUSolver) (class in fipy.solvers.scipy) (class in fipy.solvers.scipy.linearLUSolver) (class in fipy.solvers.trilinos) (class in fipy.solvers.trilinos.linearLUSolver) LinearPCGSolver (class in fipy.solvers) (class in fipy.solvers.pyAMG) (class in fipy.solvers.pyAMG.linearPCGSolver) (class in fipy.solvers.pysparse) (class in fipy.solvers.pysparse.linearPCGSolver) (class in fipy.solvers.scipy) (class in fipy.solvers.scipy.linearPCGSolver) (class in fipy.solvers.trilinos) (class in fipy.solvers.trilinos.linearPCGSolver) LINFerror() (in module fipy.steppers) LINFnorm() (in module fipy.tools.numerix) loadtxt, [1], [2] log, [1] (fipy.viewers.Matplotlib1DViewer attribute) (fipy.viewers.matplotlibViewer.Matplotlib1DViewer attribute) (fipy.viewers.matplotlibViewer.matplotlib1DViewer.Matplotlib1DViewer attribute) (fipy.viewers.matplotlibViewer.matplotlibViewer.AbstractMatplotlibViewer attribute) log() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) log10() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method)

M

mag (fipy.variables.Variable attribute) (fipy.variables.variable.Variable attribute) mathMethodDeprecated() (in module fipy.tools.decorators) Matplotlib Matplotlib1DViewer (class in fipy.viewers) (class in fipy.viewers.matplotlibViewer) (class in fipy.viewers.matplotlibViewer.matplotlib1DViewer) Matplotlib2DGridContourViewer (class in fipy.viewers) (class in fipy.viewers.matplotlibViewer) (class in fipy.viewers.matplotlibViewer.matplotlib2DGridContourViewer) Matplotlib2DGridViewer (class in fipy.viewers) (class in fipy.viewers.matplotlibViewer) (class in fipy.viewers.matplotlibViewer.matplotlib2DGridViewer) Matplotlib2DViewer (class in fipy.viewers) (class in fipy.viewers.matplotlibViewer) (class in fipy.viewers.matplotlibViewer.matplotlib2DViewer) MatplotlibSparseMatrixViewer (class in fipy.viewers.matplotlibViewer.matplotlibSparseMatrixViewer) MatplotlibVectorViewer (class in fipy.viewers) (class in fipy.viewers.matplotlibViewer) (class in fipy.viewers.matplotlibViewer.matplotlibVectorViewer) MatplotlibViewer() (in module fipy.viewers) (in module fipy.viewers.matplotlibViewer) matrix (fipy.terms.term.Term attribute) MatrixIllConditionedWarning, [1] max() (fipy.variables.Variable method) (fipy.variables.variable.Variable method) MaxAll() (fipy.tools.comms.commWrapper.CommWrapper method) (fipy.tools.comms.dummyComm.DummyComm method) MaximumIterationWarning, [1] Mayavi MayaVi MayaviClient (class in fipy.viewers) (class in fipy.viewers.mayaviViewer) (class in fipy.viewers.mayaviViewer.mayaviClient) MayaviDaemon (class in fipy.viewers.mayaviViewer.mayaviDaemon) MayaviSurfactantViewer MemoryHighWaterThread (class in fipy.tools.performance.memoryLogger) MemoryLogger (class in fipy.tools.performance.memoryLogger)

Mesh (class in fipy.meshes.mesh) Mesh1D (class in fipy.meshes.mesh1D) Mesh2D (class in fipy.meshes.mesh2D) MeshAdditionError MeshDimensionError method1() (package.subpackage.base.Base method) method2() (package.subpackage.base.Base method) (package.subpackage.object.Object method) min() (fipy.variables.Variable method) (fipy.variables.variable.Variable method) MinAll() (fipy.tools.comms.commWrapper.CommWrapper method) (fipy.tools.comms.dummyComm.DummyComm method) minmodFaceValue (fipy.variables.CellVariable attribute) (fipy.variables.cellVariable.CellVariable attribute) ModularVariable (class in fipy.variables) (class in fipy.variables.modularVariable) module fipy.tools.dump fipy.tools.parser, [1] fipy.viewers, [1], [2], [3], [4], [5], [6], [7], [8], [9] scipy Mpi4pyCommWrapper (class in fipy.tools.comms.mpi4pyCommWrapper) MultilevelDDMLPreconditioner (class in fipy.solvers.trilinos) (class in fipy.solvers.trilinos.preconditioners) (class in fipy.solvers.trilinos.preconditioners.multilevelDDMLPreconditioner) MultilevelDDPreconditioner (class in fipy.solvers.trilinos) (class in fipy.solvers.trilinos.preconditioners) (class in fipy.solvers.trilinos.preconditioners.multilevelDDPreconditioner) MultilevelNSSAPreconditioner (class in fipy.solvers.trilinos) (class in fipy.solvers.trilinos.preconditioners) (class in fipy.solvers.trilinos.preconditioners.multilevelNSSAPreconditioner) MultilevelSAPreconditioner (class in fipy.solvers.trilinos) (class in fipy.solvers.trilinos.preconditioners) (class in fipy.solvers.trilinos.preconditioners.multilevelSAPreconditioner) MultilevelSGSPreconditioner (class in fipy.solvers.trilinos) (class in fipy.solvers.trilinos.preconditioners) (class in fipy.solvers.trilinos.preconditioners.multilevelSGSPreconditioner) MultilevelSolverSmootherPreconditioner (class in fipy.solvers.trilinos) (class in fipy.solvers.trilinos.preconditioners) (class in fipy.solvers.trilinos.preconditioners.multilevelSolverSmootherPreconditioner) multiply() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) MultiViewer (class in fipy.viewers) (class in fipy.viewers.multiViewer)

N

name (fipy.variables.Variable attribute) (fipy.variables.variable.Variable attribute) name() (fipy.tools.dimensions.physicalField.PhysicalUnit method) nearest() (in module fipy.tools.numerix) NoiseVariable (class in fipy.variables.noiseVariable) NonUniformGrid1D (class in fipy.meshes.nonUniformGrid1D) NonUniformGrid2D (class in fipy.meshes.nonUniformGrid2D) NonUniformGrid3D (class in fipy.meshes.nonUniformGrid3D) Norm2() (fipy.tools.comms.commWrapper.CommWrapper method) (fipy.tools.comms.serialCommWrapper.SerialCommWrapper method)

Nproc (fipy.tools.comms.commWrapper.CommWrapper attribute) (fipy.tools.comms.serialCommWrapper.SerialCommWrapper attribute) NthOrderBoundaryCondition (class in fipy.boundaryConditions) (class in fipy.boundaryConditions.nthOrderBoundaryCondition) numarray Numeric numericValue (fipy.tools.dimensions.physicalField.PhysicalField attribute) (fipy.tools.PhysicalField attribute) (fipy.variables.Variable attribute) (fipy.variables.variable.Variable attribute) numerix numMeshDeprecated() (in module fipy.meshes.numMesh.deprecatedWarning) NumPy

O

object fipy.variables.cellVariable.CellVariable fipy.viewers.tsvViewer.TSVViewer Object (class in package.subpackage.object) OffsetSparseMatrix() (in module fipy.matrices.offsetSparseMatrix)

old (fipy.variables.CellVariable attribute) (fipy.variables.cellVariable.CellVariable attribute) openMSHFile() (in module fipy.meshes) (in module fipy.meshes.gmshMesh) openPOSFile() (in module fipy.meshes) (in module fipy.meshes.gmshMesh)

P

package.__init__ (module) package.subpackage (module) package.subpackage.base (module) package.subpackage.object (module) ParallelCommWrapper (class in fipy.tools.comms.commWrapper) parallelRandom() (fipy.variables.GaussianNoiseVariable method) (fipy.variables.gaussianNoiseVariable.GaussianNoiseVariable method) (fipy.variables.noiseVariable.NoiseVariable method) parse() (in module fipy.tools.parser) parse_command_line() (fipy.viewers.mayaviViewer.mayaviDaemon.MayaviDaemon method) PATH PeriodicGrid1D (class in fipy.meshes) (class in fipy.meshes.periodicGrid1D) PeriodicGrid2D (class in fipy.meshes) (class in fipy.meshes.periodicGrid2D) PeriodicGrid2DLeftRight (class in fipy.meshes) (class in fipy.meshes.periodicGrid2D) PeriodicGrid2DTopBottom (class in fipy.meshes) (class in fipy.meshes.periodicGrid2D) PhysicalField (class in fipy.tools) (class in fipy.tools.dimensions.physicalField) physicalShape (fipy.meshes.SkewedGrid2D attribute) (fipy.meshes.Tri2D attribute) (fipy.meshes.skewedGrid2D.SkewedGrid2D attribute) (fipy.meshes.tri2D.Tri2D attribute) PhysicalUnit (class in fipy.tools.dimensions.physicalField) pi, [1], [2] PIDStepper (class in fipy.steppers.pidStepper) pip plot() (fipy.viewers.DummyViewer method) (fipy.viewers.MayaviClient method) (fipy.viewers.MultiViewer method) (fipy.viewers.TSVViewer method) (fipy.viewers.matplotlibViewer.matplotlibSparseMatrixViewer.MatplotlibSparseMatrixViewer method) (fipy.viewers.matplotlibViewer.matplotlibViewer.AbstractMatplotlibViewer method) (fipy.viewers.mayaviViewer.MayaviClient method) (fipy.viewers.mayaviViewer.mayaviClient.MayaviClient method) (fipy.viewers.multiViewer.MultiViewer method) (fipy.viewers.tsvViewer.TSVViewer method) (fipy.viewers.viewer.AbstractViewer method) (fipy.viewers.vtkViewer.vtkViewer.VTKViewer method) plotMesh() (fipy.viewers.viewer.AbstractViewer method) poll_file() (fipy.viewers.mayaviViewer.mayaviDaemon.MayaviDaemon method)

PowerLawConvectionTerm (class in fipy.terms) (class in fipy.terms.powerLawConvectionTerm) Preconditioner (class in fipy.solvers.pysparse.preconditioners.preconditioner) (class in fipy.solvers.trilinos.preconditioners.preconditioner) PreconditionerNotPositiveDefiniteWarning, [1] PreconditionerWarning, [1] PRINT() (in module fipy.tools.debug) procID (fipy.tools.comms.commWrapper.CommWrapper attribute) (fipy.tools.comms.serialCommWrapper.SerialCommWrapper attribute) prune() (in module fipy.tools.vector) PseudoRKQSStepper (class in fipy.steppers.pseudoRKQSStepper) put() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) (in module fipy.tools.numerix), [1], [2] putAdd() (in module fipy.tools.vector) PyAMG PyPI Pyrex PySparse PysparseSolver (class in fipy.solvers.pysparse.pysparseSolver) Python Python 3 Python Enhancement Proposals PEP 3000 PEP 8 PYTHONPATH, [1], [2], [3], [4] PyTrilinos PyxViewer

Q

quiver() (fipy.viewers.MatplotlibVectorViewer method) (fipy.viewers.matplotlibViewer.MatplotlibVectorViewer method) (fipy.viewers.matplotlibViewer.matplotlibVectorViewer.MatplotlibVectorViewer method)

R

random() (fipy.variables.BetaNoiseVariable method) (fipy.variables.ExponentialNoiseVariable method) (fipy.variables.GammaNoiseVariable method) (fipy.variables.UniformNoiseVariable method) (fipy.variables.betaNoiseVariable.BetaNoiseVariable method) (fipy.variables.exponentialNoiseVariable.ExponentialNoiseVariable method) (fipy.variables.gammaNoiseVariable.GammaNoiseVariable method) (fipy.variables.noiseVariable.NoiseVariable method) (fipy.variables.uniformNoiseVariable.UniformNoiseVariable method) rank() (in module fipy.tools.numerix), [1], [2] ravel() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) read() (in module fipy.tools.dump) register_skipper() (in module fipy.tests.doctestPlus) release() (fipy.variables.CellVariable method) (fipy.variables.Variable method) (fipy.variables.cellVariable.CellVariable method) (fipy.variables.variable.Variable method) report_skips() (in module fipy.tests.doctestPlus) reshape() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) (in module fipy.tools.numerix), [1], [2]

ResidualTerm (class in fipy.terms) (class in fipy.terms.residualTerm) residualVectorAndNorm() (fipy.terms.term.Term method) RHSvector (fipy.terms.term.Term attribute) run() (fipy.tools.copy_script.Copy_script method) (fipy.tools.performance.efficiency_test.Efficiency_test method) (fipy.tools.performance.memoryLogger.MemoryHighWaterThread method) (fipy.viewers.mayaviViewer.mayaviDaemon.MayaviDaemon method) runGold runLeveler runSimpleTrenchSystem

S

save() (fipy.tools.Vitals method) (fipy.tools.vitals.Vitals method) ScalarQuantityOutOfRangeWarning, [1] scale (fipy.meshes.abstractMesh.AbstractMesh attribute) scaledCellDistances (fipy.meshes.abstractMesh.AbstractMesh attribute) scaledCellToCellDistances (fipy.meshes.abstractMesh.AbstractMesh attribute) scaledCellVolumes (fipy.meshes.abstractMesh.AbstractMesh attribute) scaledFaceAreas (fipy.meshes.abstractMesh.AbstractMesh attribute) scaledFaceToCellDistances (fipy.meshes.abstractMesh.AbstractMesh attribute) ScharfetterGummelFaceVariable (class in fipy.variables) (class in fipy.variables.scharfetterGummelFaceVariable) ScientificPython scipy module SciPy, [1], [2] scramble() (fipy.variables.noiseVariable.NoiseVariable method) SerialCommWrapper (class in fipy.tools.comms.serialCommWrapper) setLimits() (fipy.viewers.MultiViewer method) (fipy.viewers.multiViewer.MultiViewer method) (fipy.viewers.viewer.AbstractViewer method) setName() (fipy.tools.dimensions.physicalField.PhysicalUnit method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) setScale() (fipy.meshes.abstractMesh.AbstractMesh method) setUnit() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) setup_source() (fipy.viewers.mayaviViewer.mayaviDaemon.MayaviDaemon method) setValue() (fipy.variables.CellVariable method) (fipy.variables.FaceVariable method) (fipy.variables.Variable method) (fipy.variables.cellVariable.CellVariable method) (fipy.variables.faceVariable.FaceVariable method) (fipy.variables.variable.Variable method) shape (fipy.meshes.SkewedGrid2D attribute) (fipy.meshes.Tri2D attribute) (fipy.meshes.skewedGrid2D.SkewedGrid2D attribute) (fipy.meshes.tri2D.Tri2D attribute) (fipy.tools.PhysicalField attribute) (fipy.tools.dimensions.physicalField.PhysicalField attribute) (fipy.variables.Variable attribute) (fipy.variables.variable.Variable attribute) sign() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) sin() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) sinh() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) SkewedGrid2D (class in fipy.meshes) (class in fipy.meshes.skewedGrid2D) SmoothedAggregationPreconditioner (class in fipy.solvers.pyAMG.preconditioners.smoothedAggregationPreconditioner) SolutionVariableNumberError SolutionVariableRequiredError

solve solve() (fipy.solvers.trilinos.trilinosNonlinearSolver.TrilinosNonlinearSolver method) (fipy.terms.term.Term method) Solver (class in fipy.solvers) (class in fipy.solvers.solver) SolverConvergenceWarning, [1] SourceTerm (class in fipy.terms.sourceTerm) Sphinx sqrt, [1], [2] arcsin; cos sqrt() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) sqrtDot() (in module fipy.tools.numerix) SsorPreconditioner (class in fipy.solvers) (class in fipy.solvers.pysparse) (class in fipy.solvers.pysparse.preconditioners) (class in fipy.solvers.pysparse.preconditioners.ssorPreconditioner) StagnatedSolverWarning, [1] start() (fipy.tools.performance.memoryLogger.MemoryLogger method) SteadyConvectionDiffusionScEquation step() (fipy.steppers.stepper.Stepper method) Stepper (class in fipy.steppers.stepper) stop() (fipy.tools.performance.memoryLogger.MemoryHighWaterThread method) (fipy.tools.performance.memoryLogger.MemoryLogger method) subscribedVariables (fipy.variables.Variable attribute) (fipy.variables.variable.Variable attribute) subtract() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) successFn() (fipy.steppers.stepper.Stepper static method) sum() (fipy.tools.comms.commWrapper.CommWrapper method) (fipy.tools.PhysicalField method) (fipy.tools.comms.dummyComm.DummyComm method) (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) (in module fipy.tools.numerix), [1], [2] SurfactantConvectionVariable (class in fipy.variables) (class in fipy.variables.surfactantConvectionVariable) SurfactantVariable (class in fipy.variables) (class in fipy.variables.surfactantVariable) svn() (fipy.tools.Vitals method) (fipy.tools.vitals.Vitals method) svncmd() (fipy.tools.Vitals method) (fipy.tools.vitals.Vitals method) sweep, [1], [2] sweep() (fipy.terms.term.Term method) sweepFn() (fipy.steppers.stepper.Stepper static method) sweepMonotonic() (in module fipy.steppers)

T

take() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) (in module fipy.tools.numerix), [1], [2] tan tan() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) tanh tanh() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) Term (class in fipy.terms.term) TermMultiplyError testmod() (in module fipy.tests.doctestPlus) tostring() (fipy.tools.dimensions.physicalField.PhysicalField method) (fipy.tools.PhysicalField method) (fipy.variables.Variable method) (fipy.variables.variable.Variable method) (in module fipy.tools.numerix)

TransientTerm, [1], [2], [3] (class in fipy.terms) (class in fipy.terms.transientTerm) Tri2D (class in fipy.meshes) (class in fipy.meshes.tri2D) Trilinos TrilinosAztecOOSolver (class in fipy.solvers.trilinos.trilinosAztecOOSolver) TrilinosMLTest (class in fipy.solvers.trilinos) (class in fipy.solvers.trilinos.trilinosMLTest) TrilinosNonlinearSolver (class in fipy.solvers.trilinos.trilinosNonlinearSolver) TrilinosSolver (class in fipy.solvers.trilinos.trilinosSolver) TSVViewer (class in fipy.viewers) (class in fipy.viewers.tsvViewer) tupleToXML() (fipy.tools.Vitals method) (fipy.tools.vitals.Vitals method)

U

UniformGrid (class in fipy.meshes.uniformGrid) UniformGrid1D (class in fipy.meshes.uniformGrid1D) UniformGrid2D (class in fipy.meshes.uniformGrid2D) UniformGrid3D (class in fipy.meshes.uniformGrid3D) UniformNoiseVariable (class in fipy.variables) (class in fipy.variables.uniformNoiseVariable)

unit (fipy.tools.dimensions.physicalField.PhysicalField attribute) (fipy.tools.PhysicalField attribute) (fipy.variables.Variable attribute) (fipy.variables.variable.Variable attribute) update_pipeline() (fipy.viewers.mayaviViewer.mayaviDaemon.MayaviDaemon method) updateOld() (fipy.variables.CellVariable method) (fipy.variables.ModularVariable method) (fipy.variables.cellVariable.CellVariable method) (fipy.variables.modularVariable.ModularVariable method) UpwindConvectionTerm (class in fipy.terms) (class in fipy.terms.upwindConvectionTerm) user_options (fipy.tools.copy_script.Copy_script attribute) (fipy.tools.performance.efficiency_test.Efficiency_test attribute)

V

value (fipy.variables.Variable attribute) (fipy.variables.variable.Variable attribute) VanLeerConvectionTerm (class in fipy.terms) (class in fipy.terms.vanLeerConvectionTerm) Variable, [1] (class in fipy.variables) (class in fipy.variables.variable) VectorCoeffError vertexCoords (fipy.meshes.uniformGrid1D.UniformGrid1D attribute) (fipy.meshes.uniformGrid2D.UniformGrid2D attribute) (fipy.meshes.uniformGrid3D.UniformGrid3D attribute) view_data() (fipy.viewers.mayaviViewer.mayaviDaemon.MayaviDaemon method) Viewer() (in module fipy.viewers)

Vitals (class in fipy.tools) (class in fipy.tools.vitals) VTKCellDataSet (fipy.meshes.abstractMesh.AbstractMesh attribute) VTKCellViewer (class in fipy.viewers) (class in fipy.viewers.vtkViewer) (class in fipy.viewers.vtkViewer.vtkCellViewer) VTKFaceDataSet (fipy.meshes.abstractMesh.AbstractMesh attribute) VTKFaceViewer (class in fipy.viewers) (class in fipy.viewers.vtkViewer) (class in fipy.viewers.vtkViewer.vtkFaceViewer) VTKViewer (class in fipy.viewers.vtkViewer.vtkViewer) VTKViewer() (in module fipy.viewers) (in module fipy.viewers.vtkViewer)

W

write() (in module fipy.tools.dump)

X

x (fipy.meshes.abstractMesh.AbstractMesh attribute)

Y

y (fipy.meshes.abstractMesh.AbstractMesh attribute)

Z

z (fipy.meshes.abstractMesh.AbstractMesh attribute)